Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 2.9e-109 398.7 214 100.0
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 3.8e-101 371.7 214 93.9
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.1e-89 333.6 214 84.1
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 5.9e-70 268.1 214 69.6
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 1.1e-68 263.8 199 72.9
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 1.5e-68 263.5 204 71.6
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 3.2e-68 262.3 202 71.8
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.2e-67 260.4 214 66.4
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 1.2e-67 260.4 210 69.0
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.6e-67 260.0 210 69.5
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 8.0e-67 257.7 205 68.8
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.3e-66 256.1 197 70.6
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.3e-66 256.1 214 67.3
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.0e-66 255.8 212 69.3
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.0e-66 255.8 199 69.3
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 5.2e-66 255.0 204 69.1
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 8.8e-66 254.2 205 67.3
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-65 253.8 187 71.7
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.1e-65 253.8 196 72.4
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.0e-65 253.1 209 68.9
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.0e-65 253.1 195 70.3
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 2.0e-65 253.1 212 69.3
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 2.0e-65 253.1 209 67.0
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 2.6e-65 252.7 209 67.5
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.6e-65 252.7 197 70.6
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 4.4e-65 251.9 209 67.5
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 4.4e-65 251.9 205 68.8
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 4.4e-65 251.9 204 69.1
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 5.7e-65 251.5 191 71.7
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 5.7e-65 251.5 214 65.4
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 7.5e-65 251.1 210 68.6
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 9.7e-65 250.8 199 71.9
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 9.7e-65 250.8 209 67.9
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.3e-64 250.4 213 64.3
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 2.2e-64 249.6 188 68.6
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 2.2e-64 249.6 189 73.5
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 2.8e-64 249.2 190 68.9
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 3.7e-64 248.8 215 65.1
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 4.8e-64 248.4 205 66.8
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 4.8e-64 248.4 194 70.1
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.4e-63 246.9 190 67.9
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.8e-63 246.5 187 70.6
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 3.1e-63 245.7 194 69.6
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 4.1e-63 245.4 204 64.7
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 5.3e-63 245.0 209 65.1
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 7.0e-63 244.6 198 69.2
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 9.1e-63 244.2 190 69.5
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.2e-62 243.8 210 63.3
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.2e-62 243.8 191 68.6
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 2.7e-62 242.7 210 63.3
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 4.5e-62 241.9 209 64.6
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 5.9e-62 241.5 196 67.3
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 5.9e-62 241.5 193 68.9
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.9e-62 241.5 210 62.9
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.3e-61 240.4 192 67.7
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.7e-61 240.0 214 65.0
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 5.0e-61 238.4 137 96.4
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 6.5e-61 238.0 196 65.3
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.9e-60 236.5 187 65.8
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 2.5e-60 236.1 196 64.8
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.5e-60 236.1 186 70.4
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 5.5e-60 235.0 220 62.3
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 5.5e-60 235.0 196 64.8
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 7.2e-60 234.6 200 64.5
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 9.4e-60 234.2 191 66.5
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-58 230.3 202 63.4
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 2.3e-58 229.6 195 65.1
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 2.3e-58 229.6 195 65.1
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 2.3e-58 229.6 195 65.1
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 5.2e-58 228.4 200 64.0
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 8.8e-58 227.6 194 62.9
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 8.8e-58 227.6 190 66.8
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 5.7e-57 224.9 193 64.8
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 6.3e-56 221.5 193 64.2
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 6.3e-56 221.5 193 64.2
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 8.3e-56 221.1 211 61.1
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 1.8e-55 219.9 175 66.9
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 1.8e-55 219.9 175 66.9
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 2.4e-55 219.5 229 57.6
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 2.0e-54 216.5 180 66.7
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.3e-53 213.8 214 59.8
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 3.8e-53 212.2 187 62.0
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 3.8e-53 212.2 187 62.0
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 5.0e-53 211.8 201 60.7
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.5e-52 210.3 181 60.8
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 4.2e-52 208.8 202 60.4
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 4.2e-52 208.8 192 58.9
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 7.2e-52 208.0 192 63.0
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 7.2e-52 208.0 213 57.3
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.6e-51 206.8 143 72.7
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 8.0e-51 204.5 209 54.5
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 8.0e-51 204.5 213 56.8
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.3e-50 203.0 168 61.9
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 3.0e-50 202.6 191 60.2
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 5.2e-50 201.8 145 68.3
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 8.8e-50 201.1 155 65.2
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.4e-49 198.7 198 56.6
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.4e-49 198.7 155 69.0
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 5.7e-49 198.4 157 66.2
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.3e-48 197.2 157 66.2
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.7e-48 196.8 203 57.1
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 2.2e-48 196.4 200 57.0
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.8e-47 193.4 142 73.2
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 3.1e-47 192.6 178 56.7
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 4.1e-47 192.2 131 75.6
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 3.5e-46 189.1 209 53.6
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 5.9e-46 188.3 258 47.3
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 8.0e-43 177.9 169 56.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 8.9e-42 174.5 124 68.5
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 7.5e-41 171.4 153 67.3
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 2.9e-40 169.5 114 72.8
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 3.7e-40 169.1 122 68.9
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.9e-40 168.7 199 53.8
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.9e-36 156.8 110 64.5
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.1e-31 139.0 114 66.7
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 7.8e-30 134.8 103 69.9
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 1.7e-29 133.7 124 62.9
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.0e-29 132.9 102 62.7
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.5e-28 129.8 98 70.4
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 5.6e-28 128.6 176 38.1
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 6.2e-27 125.2 98 68.4
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.4e-24 115.2 100 64.0
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 1.4e-23 114.0 123 52.0
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 9.2e-23 111.3 204 33.3
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.5e-22 109.4 149 45.6
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.5e-22 109.4 195 36.4
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.9e-20 103.6 99 56.6
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 5.6e-20 102.1 81 63.0
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.6e-19 100.5 68 75.0
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-18 97.8 79 63.3
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 4.0e-18 95.9 62 71.0
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 2.0e-17 93.6 153 43.8
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.7e-16 90.5 59 76.3
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.3e-13 80.9 108 37.0
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 3.0e-13 79.7 140 32.9


User provided reference genes

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