Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 0.0e+00 1337.0 703 100.0
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 0.0e+00 1257.7 703 91.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 0.0e+00 1115.9 706 84.1
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.5e-292 1009.2 715 73.8
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 4.2e-197 692.2 713 52.6
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.8e-192 676.8 722 52.9
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 7.6e-191 671.4 709 52.6
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 2.2e-190 669.8 706 55.1
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 7.1e-189 664.8 703 54.1
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 8.7e-187 657.9 713 52.5
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 9.3e-181 637.9 711 50.9
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.7e-177 625.9 711 52.2
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 6.2e-177 625.2 711 52.2
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.1e-176 624.4 715 50.1
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.4e-176 624.0 715 50.1
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 9.0e-176 621.3 709 49.8
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.7e-174 617.1 723 49.0
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 3.8e-174 615.9 722 49.4
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.5e-173 612.1 724 49.4
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.6e-172 609.0 711 51.5
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 7.9e-172 608.2 715 50.8
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 3.9e-171 605.9 694 52.4
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 5.7e-170 602.1 742 47.4
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 6.3e-169 598.6 711 49.9
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.1e-168 597.8 729 49.2
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.8e-168 597.0 706 50.0
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.5e-167 594.0 723 48.1
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 4.5e-167 592.4 703 50.8
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.2e-161 573.5 708 48.0
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.8e-161 573.2 721 45.8
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.8e-161 573.2 735 46.8
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 9.0e-160 568.2 719 46.9
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.2e-158 563.5 723 45.8
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.2e-158 563.5 741 45.9
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 3.8e-158 562.8 717 47.7
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.7e-156 556.6 712 47.1
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.9e-156 555.1 719 47.1
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.0e-155 554.7 715 45.7
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.4e-155 554.3 719 46.2
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 2.3e-155 553.5 732 44.7
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 5.7e-154 548.9 717 45.6
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.7e-153 547.4 726 45.7
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-152 544.7 628 49.0
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 2.4e-152 543.5 736 45.0
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 4.1e-152 542.7 709 46.5
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 4.1e-152 542.7 647 47.0
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.5e-151 540.8 704 46.3
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.7e-150 537.3 710 44.6
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.2e-148 531.2 708 44.6
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 3.9e-147 526.2 721 43.1
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 5.1e-147 525.8 636 46.9
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 5.1e-147 525.8 722 43.4
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 4.5e-143 512.7 716 44.7
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 6.5e-142 508.8 639 46.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 1.1e-141 508.1 659 44.3
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 1.5e-141 507.7 659 44.2
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.2e-141 506.1 712 42.1
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 9.4e-141 505.0 706 44.2
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 9.4e-141 505.0 638 45.5
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.6e-140 504.2 721 44.2
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 2.1e-140 503.8 735 42.3
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 4.7e-140 502.7 698 46.1
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 6.1e-140 502.3 662 43.7
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.8e-139 500.7 721 44.4
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.8e-139 500.7 654 44.0
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 6.7e-139 498.8 713 44.2
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 3.1e-136 490.0 655 43.8
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 2.0e-135 487.3 724 41.6
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 2.9e-134 483.4 544 49.6
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.1e-132 477.2 714 43.1
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.1e-132 475.7 688 43.6
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 8.0e-132 475.3 713 42.9
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.0e-131 474.9 716 43.4
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.3e-131 473.8 634 44.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 5.2e-131 472.6 745 42.3
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.7e-129 466.5 694 42.8
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-128 464.9 793 40.1
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 9.1e-128 461.8 720 40.8
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.3e-126 458.0 713 42.2
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.7e-126 457.6 716 41.3
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 4.2e-125 453.0 587 45.3
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 4.7e-124 449.5 707 42.4
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.0e-123 446.4 660 42.6
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 5.4e-120 436.0 591 43.7
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 2.7e-119 433.7 859 36.7
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 4.5e-119 433.0 639 42.1
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 5.9e-119 432.6 680 41.5
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.0e-118 431.8 714 39.5
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 6.6e-118 429.1 705 40.3
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 9.5e-117 425.2 714 39.1
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.6e-116 424.5 735 39.6
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.7e-113 414.5 711 39.4
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 5.4e-112 409.5 726 38.4
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 4.6e-111 406.4 590 42.4
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 2.3e-110 404.1 486 49.0
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 6.6e-110 402.5 498 47.4
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 4.9e-97 359.8 517 41.4
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.4e-96 358.2 510 41.2
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.1e-96 356.7 708 37.7
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 2.1e-95 354.4 665 38.0
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 4.6e-95 353.2 600 37.3
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.1e-94 349.7 479 44.1
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.1e-93 348.6 473 46.1
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.5e-93 347.4 466 44.4
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 5.6e-93 346.3 696 36.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.3e-91 340.9 496 41.3
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 3.1e-91 340.5 646 36.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.5e-90 338.2 651 35.5
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 9.2e-88 328.9 561 38.3
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.6e-86 322.8 412 46.1
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.8e-83 314.7 666 34.1
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.5e-82 311.6 699 33.0
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.2e-81 307.8 516 37.0
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 3.2e-80 303.9 497 39.8
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 5.4e-80 303.1 668 33.1
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 5.4e-80 303.1 668 33.1
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.7e-78 298.1 582 34.5
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.3e-77 293.5 370 44.6
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.6e-71 273.5 494 36.2
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.1e-67 260.8 684 32.5
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.9e-57 226.9 336 39.9
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.1e-54 216.9 438 33.3
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 3.1e-51 207.6 277 54.2
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.1e-51 207.2 374 34.5
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.7e-46 189.9 478 33.1
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.2e-42 179.1 217 41.9
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.0e-41 176.0 204 49.5
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 1.4e-40 172.2 265 37.7
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 7.9e-39 166.4 224 44.2
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 8.8e-38 162.9 250 44.8
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 5.7e-37 160.2 241 42.3
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 2.8e-36 157.9 246 45.5
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.1e-35 154.5 330 34.5
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.1e-35 154.1 234 41.5
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.4e-34 151.0 237 42.6
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 5.5e-32 143.7 375 30.9
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 2.6e-29 134.8 265 33.2
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.1e-27 127.5 150 44.0
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.2e-26 125.9 181 37.6
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.5e-24 119.0 461 27.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 7.2e-24 116.7 193 37.3
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.6e-23 115.5 359 31.2
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.6e-23 114.4 87 63.2
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 4.4e-21 107.5 315 33.3
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.2e-20 105.1 106 53.8
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 4.8e-20 104.0 130 41.5
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 3.5e-18 97.8 652 26.5
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.0e-17 96.3 86 51.2
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 1.7e-17 95.5 301 29.2
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 8.5e-17 93.2 107 45.8
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.9e-16 92.0 166 38.6
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.5e-16 91.7 127 41.7
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 1.2e-15 89.4 638 22.4
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.6e-15 89.0 138 36.2
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.7e-15 87.4 101 46.5
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.0e-15 86.7 87 50.6
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.0e-14 86.3 80 52.5
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.8e-14 85.5 153 37.3
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.0e-14 84.7 88 50.0
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.0e-14 84.3 106 45.3
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 2.6e-13 81.6 81 53.1
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.9e-09 68.2 103 39.8
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 1.1e-08 66.2 136 33.8
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.5e-08 65.1 46 60.9
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 1.8e-06 58.9 332 25.6
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 5.2e-06 57.4 123 31.7


User provided reference genes

Program Settings