Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.3e-71 271.6 134 100.0
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.0e-61 237.3 135 92.6
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 9.4e-50 200.3 134 77.6
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.6e-44 183.0 134 72.4
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 9.2e-37 157.1 94 85.1
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.6e-31 139.0 133 55.6
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 7.5e-31 137.5 135 55.6
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 2.2e-30 136.0 135 55.6
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 2.2e-30 136.0 133 51.9
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 8.3e-30 134.0 133 56.4
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 5.4e-29 131.3 135 54.1
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 5.4e-29 131.3 132 56.8
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.2e-28 130.2 137 56.2
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 2.0e-28 129.4 120 54.2
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 4.6e-28 128.3 134 55.2
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 4.6e-28 128.3 131 53.4
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 6.0e-28 127.9 132 53.0
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 7.8e-28 127.5 140 53.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 3.0e-27 125.6 132 55.3
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 3.9e-27 125.2 131 52.7
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.5e-26 123.2 131 52.7
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.5e-26 122.5 136 47.8
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 2.5e-26 122.5 134 53.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 3.3e-26 122.1 136 53.7
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.3e-26 121.7 132 54.5
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.6e-26 121.3 130 53.8
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.3e-26 120.9 132 52.3
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 7.3e-26 120.9 131 51.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 9.5e-26 120.6 131 51.9
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.2e-25 120.2 132 52.3
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.2e-25 120.2 132 52.3
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.2e-25 120.2 131 51.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.8e-25 119.0 137 50.4
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 4.7e-25 118.2 132 51.5
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.2e-25 117.9 134 52.2
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.1e-24 117.1 132 52.3
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.4e-24 116.7 134 50.0
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.8e-24 116.3 90 66.7
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.8e-24 116.3 135 52.6
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.3e-24 115.9 91 62.6
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 2.3e-24 115.9 120 53.3
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 8.9e-24 114.0 137 49.6
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 8.9e-24 114.0 131 50.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.5e-23 113.2 142 51.4
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.0e-23 112.8 134 52.2
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 2.0e-23 112.8 133 46.6
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.6e-23 112.5 138 47.8
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.6e-23 112.5 133 48.1
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 4.4e-23 111.7 134 47.8
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 4.4e-23 111.7 136 50.7
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 9.8e-23 110.5 134 50.0
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-22 110.2 130 51.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.2e-22 109.4 130 49.2
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.9e-22 109.0 132 50.0
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.9e-22 109.0 136 49.3
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 3.7e-22 108.6 133 51.9
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 3.7e-22 108.6 139 45.3
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 3.7e-22 108.6 137 51.1
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.4e-22 107.8 130 48.5
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 6.4e-22 107.8 130 49.2
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 6.4e-22 107.8 134 48.5
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.1e-21 107.1 134 50.7
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.1e-21 107.1 134 50.7
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.9e-21 106.3 131 51.1
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 4.1e-21 105.1 131 45.0
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 4.1e-21 105.1 131 45.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.1e-21 105.1 136 46.3
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 5.4e-21 104.8 104 57.7
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 7.1e-21 104.4 131 45.8
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.1e-21 104.4 90 60.0
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 7.1e-21 104.4 130 50.8
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 9.2e-21 104.0 133 45.9
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 9.2e-21 104.0 131 45.0
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-20 103.6 131 48.9
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.2e-20 103.6 131 45.0
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.2e-20 103.6 131 46.6
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.6e-20 103.2 131 48.9
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.6e-20 103.2 131 44.3
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.1e-20 102.8 132 50.8
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.7e-20 102.4 95 53.7
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 3.5e-20 102.1 135 45.2
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 4.6e-20 101.7 131 45.8
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.6e-20 101.7 131 47.3
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.8e-20 100.9 130 50.0
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 7.8e-20 100.9 133 44.4
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 7.8e-20 100.9 133 44.4
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 7.8e-20 100.9 130 48.5
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.0e-19 100.5 134 49.3
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.0e-19 100.5 133 45.1
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.3e-19 100.1 91 58.2
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.3e-19 100.1 101 54.5
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.3e-19 100.1 131 49.6
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.7e-19 99.8 131 44.3
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.3e-19 99.4 131 47.3
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 2.3e-19 99.4 131 45.0
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 2.3e-19 99.4 131 45.0
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 2.3e-19 99.4 130 49.2
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 3.0e-19 99.0 133 45.1
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.0e-19 99.0 132 46.2
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.9e-19 98.6 131 46.6
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 3.9e-19 98.6 130 47.7
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 5.1e-19 98.2 131 48.1
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 5.1e-19 98.2 131 42.7
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.1e-19 98.2 133 45.9
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 8.6e-19 97.4 133 46.6
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.1e-18 97.1 133 43.6
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.1e-18 97.1 131 49.6
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.5e-18 96.7 133 45.9
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.5e-18 96.7 133 45.9
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.5e-18 96.7 133 45.9
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.5e-18 96.7 133 45.9
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.5e-18 96.7 102 54.9
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.5e-18 96.7 102 54.9
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.5e-18 96.7 133 46.6
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.5e-18 96.7 130 46.2
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.9e-18 96.3 90 55.6
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.3e-18 95.5 133 48.1
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 3.3e-18 95.5 130 47.7
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.3e-18 95.5 132 48.5
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 4.3e-18 95.1 91 52.7
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 4.3e-18 95.1 101 53.5
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 5.6e-18 94.7 90 53.3
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.2e-17 93.6 104 51.9
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.2e-17 93.6 89 58.4
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.6e-17 93.2 133 45.1
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.6e-17 93.2 131 46.6
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 2.1e-17 92.8 130 44.6
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.1e-17 92.8 89 58.4
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.8e-17 92.4 136 45.6
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 6.2e-17 91.3 96 53.1
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.8e-16 89.7 131 42.7
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.8e-16 89.7 132 45.5
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.3e-16 89.4 131 42.0
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.3e-16 89.4 118 50.0
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 3.1e-16 89.0 133 42.9
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.0e-16 88.6 93 50.5
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 8.9e-16 87.4 122 43.4
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.5e-15 86.7 133 45.1
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.0e-15 86.3 103 48.5
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.0e-15 86.3 124 42.7
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.4e-15 85.5 82 52.4
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 5.8e-15 84.7 131 44.3
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.6e-15 84.3 137 40.1
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.6e-15 84.3 125 46.4
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 7.6e-15 84.3 134 45.5
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 9.9e-15 84.0 128 43.8
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 9.9e-15 84.0 97 48.5
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 9.9e-15 84.0 90 53.3
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.7e-14 83.2 120 42.5
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.2e-14 82.8 89 53.9
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.9e-14 82.4 130 43.1
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 3.7e-14 82.0 91 52.7
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.7e-14 82.0 131 44.3
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.4e-14 81.3 103 47.6
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 8.4e-14 80.9 89 55.1
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.9e-13 79.7 130 41.5
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.9e-13 79.7 134 41.0
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.2e-13 79.0 105 43.8
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 4.1e-13 78.6 93 46.2
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 4.1e-13 78.6 104 42.3
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.4e-13 78.2 101 47.5
ClCG07G017270 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.1e-13 77.8 42 90.5
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 7.1e-13 77.8 98 46.9
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 7.1e-13 77.8 89 51.7
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.2e-12 77.0 104 42.3
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.2e-12 77.0 107 40.2
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.2e-12 77.0 89 51.7
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 2.1e-12 76.3 139 41.0
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.7e-12 75.9 125 44.8
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.0e-12 74.7 130 38.5
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.8e-12 74.3 103 45.6
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.0e-11 73.9 101 51.5
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.7e-11 73.2 104 42.3
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.7e-11 73.2 135 41.5
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.3e-11 72.8 138 38.4
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.0e-11 72.4 135 41.5
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 3.9e-11 72.0 115 42.6
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 3.9e-11 72.0 86 52.3
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.9e-11 72.0 126 40.5
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 8.6e-11 70.9 94 42.6
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.5e-10 69.3 129 39.5
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.3e-10 68.9 130 38.5
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.6e-10 68.2 54 61.1
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 2.1e-09 66.2 115 37.4
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.8e-07 58.2 48 60.4
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.8e-07 58.2 98 35.7
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.7e-06 56.6 90 40.0


User provided reference genes

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