Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 1.2e-163 579.7 280 100.0
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 5.8e-134 481.1 286 85.0
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 3.7e-64 249.2 290 51.0
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 4.1e-63 245.7 278 49.6
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 4.1e-63 245.7 277 50.5
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.2e-62 244.2 277 48.7
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.2e-62 244.2 277 48.7
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.6e-62 243.8 280 50.7
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.6e-62 243.8 277 48.4
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.6e-62 243.8 288 48.6
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.6e-62 243.8 277 50.9
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 2.0e-62 243.4 277 50.9
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 2.0e-62 243.4 277 50.5
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 2.7e-62 243.0 276 50.4
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 2.7e-62 243.0 276 50.7
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 3.5e-62 242.7 278 49.3
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 3.5e-62 242.7 288 48.6
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 4.5e-62 242.3 277 49.5
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 4.5e-62 242.3 276 50.0
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 4.5e-62 242.3 280 50.4
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 5.9e-62 241.9 291 48.5
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 5.9e-62 241.9 290 46.9
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 7.7e-62 241.5 280 49.3
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.0e-61 241.1 277 49.5
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.0e-61 241.1 280 49.6
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.0e-61 241.1 276 49.3
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 1.3e-61 240.7 277 50.9
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 1.3e-61 240.7 277 47.7
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 1.3e-61 240.7 280 48.9
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.3e-61 240.7 280 48.9
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.7e-61 240.4 280 49.6
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.7e-61 240.4 277 49.5
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 1.7e-61 240.4 288 48.6
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 2.2e-61 240.0 287 47.7
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.2e-61 240.0 285 48.1
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 2.9e-61 239.6 276 48.6
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 2.9e-61 239.6 280 50.7
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.9e-61 239.6 279 49.5
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 2.9e-61 239.6 280 49.3
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 3.8e-61 239.2 289 47.1
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 3.8e-61 239.2 285 47.4
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 3.8e-61 239.2 285 47.4
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 3.8e-61 239.2 278 49.6
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 3.8e-61 239.2 276 48.6
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 5.0e-61 238.8 276 48.6
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 5.0e-61 238.8 280 49.3
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 6.5e-61 238.4 277 49.8
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 6.5e-61 238.4 276 48.2
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 8.5e-61 238.0 278 49.3
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 8.5e-61 238.0 279 48.7
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.1e-60 237.7 288 48.6
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.5e-60 237.3 276 49.6
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.5e-60 237.3 289 47.8
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.5e-60 237.3 278 48.2
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.9e-60 236.9 277 48.7
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.9e-60 236.9 276 49.3
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.9e-60 236.9 276 49.6
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.5e-60 236.5 277 48.7
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 3.2e-60 236.1 290 47.6
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 3.2e-60 236.1 279 49.1
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.2e-60 236.1 288 48.3
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 4.2e-60 235.7 278 48.9
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.5e-60 235.3 286 47.2
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 5.5e-60 235.3 277 48.4
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 5.5e-60 235.3 276 48.9
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 7.2e-60 235.0 277 48.0
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 7.2e-60 235.0 274 49.3
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 9.4e-60 234.6 280 48.9
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 9.4e-60 234.6 292 46.2
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 9.4e-60 234.6 279 47.7
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 2.1e-59 233.4 277 47.7
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 2.7e-59 233.0 276 47.8
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.7e-59 233.0 279 47.7
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 4.7e-59 232.3 291 46.0
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 4.7e-59 232.3 288 46.2
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 4.7e-59 232.3 276 48.2
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 4.7e-59 232.3 290 46.9
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 6.1e-59 231.9 275 47.6
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 8.0e-59 231.5 275 49.1
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.0e-58 231.1 277 47.3
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.0e-58 231.1 277 47.3
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.4e-58 230.7 274 48.2
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 1.4e-58 230.7 280 48.6
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.8e-58 230.3 276 48.2
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.8e-58 230.3 279 47.7
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.0e-58 229.6 277 47.7
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 5.2e-58 228.8 276 47.1
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 5.2e-58 228.8 280 48.2
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 5.2e-58 228.8 273 49.1
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 8.8e-58 228.0 273 46.9
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.2e-57 227.6 280 48.9
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 1.2e-57 227.6 311 45.3
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.5e-57 227.3 278 47.1
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 3.4e-57 226.1 280 45.7
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 3.4e-57 226.1 273 46.2
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 3.4e-57 226.1 281 46.3
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 5.7e-57 225.3 284 46.1
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 5.7e-57 225.3 284 46.1
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.5e-57 224.9 279 46.6
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.5e-57 224.9 279 46.2
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.5e-57 224.9 295 46.1
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 1.3e-56 224.2 279 46.2
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 1.7e-56 223.8 278 44.6
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.7e-56 223.8 304 45.7
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.2e-56 223.4 279 46.2
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.2e-56 223.4 279 47.0
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.2e-56 223.4 279 46.2
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.2e-56 223.4 279 46.2
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 2.2e-56 223.4 274 46.7
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 2.8e-56 223.0 274 47.8
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 2.8e-56 223.0 274 47.4
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 3.7e-56 222.6 288 44.8
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 8.3e-56 221.5 273 47.3
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.4e-55 220.7 283 47.0
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.4e-55 219.9 279 45.2
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 2.4e-55 219.9 276 44.9
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 3.1e-55 219.5 280 45.7
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.1e-55 219.5 280 45.7
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 3.5e-54 216.1 277 44.8
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 4.5e-54 215.7 278 46.8
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 1.3e-53 214.2 275 46.5
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.3e-53 214.2 279 44.8
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 2.9e-53 213.0 251 48.6
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 5.0e-53 212.2 273 46.2
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 1.1e-52 211.1 278 47.1
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 1.5e-52 210.7 345 39.4
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 4.2e-52 209.1 254 47.6
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 2.1e-51 206.8 258 48.1
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 1.4e-50 204.1 276 43.5
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.4e-49 199.5 240 49.2
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.7e-48 196.1 294 44.2
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 2.4e-47 193.4 287 41.5
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.6e-46 190.7 265 44.5
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 2.0e-41 173.7 262 39.3
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 4.4e-41 172.6 426 32.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.7e-37 160.6 213 45.1
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 6.6e-37 158.7 274 35.0
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 3.3e-36 156.4 284 36.3
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 6.8e-34 148.7 135 56.3
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 1.7e-32 144.1 266 35.0
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 2.2e-32 143.7 254 35.0
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 3.2e-31 139.8 272 32.0
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 1.0e-29 134.8 142 50.7
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 3.0e-29 133.3 192 41.1
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.6e-27 126.3 142 46.5
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.6e-27 126.3 142 46.5
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 5.2e-26 122.5 256 31.2
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.7e-24 117.5 168 41.7
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 5.4e-23 112.5 186 37.6
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.7e-22 110.2 96 54.2
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.5e-22 109.8 168 39.9
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.8e-18 97.4 139 43.9
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.2e-17 94.7 239 30.5
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 2.0e-17 94.0 128 46.1
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 4.6e-14 82.8 119 42.0
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 5.1e-13 79.3 74 52.7
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.6e-13 79.0 159 35.8
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.9e-12 77.4 74 51.4
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.9e-12 77.4 74 51.4
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 1.4e-10 71.2 112 36.6
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 7.6e-09 65.5 56 53.6
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.9e-09 65.1 146 34.9
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.9e-07 60.8 101 40.6


User provided reference genes

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