Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 8.1e-191 670.2 338 100.0
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 2.0e-189 665.6 338 99.1
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 1.9e-184 649.0 338 95.9
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 3.7e-183 644.8 338 95.3
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 2.6e-181 638.6 338 93.5
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 7.6e-181 637.1 338 93.5
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 7.6e-181 637.1 338 93.8
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.0e-180 636.7 338 93.5
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.3e-180 636.3 338 93.5
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.7e-180 636.0 338 93.2
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.9e-180 635.2 338 93.2
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.4e-179 632.9 338 92.6
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 9.3e-179 630.2 333 94.0
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 7.9e-178 627.1 338 92.0
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 1.3e-177 626.3 338 91.4
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.3e-177 626.3 335 91.9
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.3e-177 625.5 334 92.5
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 5.1e-177 624.4 339 91.7
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 6.7e-177 624.0 338 91.4
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 5.7e-176 620.9 338 90.5
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 7.4e-176 620.5 339 90.9
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.6e-175 619.4 338 90.5
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 2.8e-175 618.6 338 90.2
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 3.7e-175 618.2 333 91.3
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 4.8e-175 617.8 336 90.5
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 8.2e-175 617.1 339 90.3
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.1e-174 616.7 338 89.9
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.4e-174 616.3 338 89.6
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 2.4e-174 615.5 332 90.7
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 4.1e-174 614.8 338 89.9
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 4.1e-174 614.8 338 89.9
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 4.1e-174 614.8 338 89.9
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.1e-174 614.8 339 90.3
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 4.1e-174 614.8 339 90.3
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 5.3e-174 614.4 339 90.3
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.3e-174 614.4 339 90.3
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 6.9e-174 614.0 338 89.6
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 9.0e-174 613.6 338 89.6
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 9.0e-174 613.6 337 90.2
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.2e-173 613.2 339 90.0
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 90.5
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 90.2
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.5e-173 612.8 338 89.9
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 2.0e-173 612.5 338 89.3
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.0e-173 612.5 339 88.8
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 2.0e-173 612.5 338 89.6
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 3.4e-173 611.7 338 89.9
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 3.4e-173 611.7 333 91.3
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 3.4e-173 611.7 339 89.7
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 5.9e-173 610.9 337 89.9
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.9e-173 610.9 339 87.9
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 5.9e-173 610.9 335 89.3
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.0e-172 610.1 338 89.1
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 2.2e-172 609.0 338 89.1
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 3.8e-172 608.2 338 88.8
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 5.0e-172 607.8 337 89.6
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 6.5e-172 607.4 333 90.1
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 8.4e-172 607.1 339 89.1
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 8.4e-172 607.1 338 88.5
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.1e-171 606.7 332 90.4
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.1e-171 606.7 339 89.7
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.4e-171 606.3 332 90.7
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.5e-171 605.5 339 88.5
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 5.5e-171 604.4 332 89.2
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 7.2e-171 604.0 339 88.2
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 7.2e-171 604.0 339 88.2
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 2.1e-170 602.4 334 90.1
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 7.9e-170 600.5 339 87.9
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.3e-169 599.7 337 88.4
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.8e-169 599.4 339 87.3
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.8e-169 599.4 340 87.4
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.8e-169 599.4 339 87.6
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.8e-169 599.4 340 87.6
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 2.3e-169 599.0 338 87.0
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.9e-169 598.2 341 86.8
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 5.1e-169 597.8 325 91.7
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.1e-168 596.7 333 88.3
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 3.7e-167 591.7 354 84.2
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 8.2e-167 590.5 338 84.3
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.1e-166 590.1 380 79.5
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.4e-166 589.7 332 86.7
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 4.1e-166 588.2 317 91.5
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 2.0e-165 585.9 338 87.6
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 4.5e-165 584.7 316 91.5
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 8.5e-164 580.5 309 91.6
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.4e-163 579.7 319 90.3
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 4.2e-163 578.2 335 83.9
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 7.2e-163 577.4 332 85.2
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.2e-162 576.6 338 82.8
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 4.6e-162 574.7 319 87.1
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.1e-162 574.3 320 88.8
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.0e-161 572.0 335 82.7
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.5e-160 569.7 309 89.6
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 2.0e-160 569.3 336 82.4
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 2.0e-160 569.3 335 83.0
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 2.0e-160 569.3 336 82.7
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.6e-160 568.9 336 82.1
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 3.3e-160 568.5 336 82.4
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 4.3e-160 568.2 335 82.4
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 4.3e-160 568.2 335 82.4
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 4.3e-160 568.2 336 82.4
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 5.7e-160 567.8 336 82.7
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 5.7e-160 567.8 337 81.9
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 5.7e-160 567.8 335 82.7
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 7.4e-160 567.4 338 85.8
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 9.7e-160 567.0 335 82.1
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.7e-160 567.0 339 85.0
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.7e-159 566.2 338 81.4
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.8e-159 565.5 335 82.1
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 3.7e-159 565.1 336 82.1
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 6.3e-159 564.3 336 81.5
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 6.3e-159 564.3 337 81.6
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 8.2e-159 563.9 336 81.8
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 8.2e-159 563.9 334 82.3
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 4.1e-158 561.6 336 81.8
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 6.9e-158 560.8 327 82.3
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 3.4e-157 558.5 343 80.5
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 1.0e-156 557.0 351 78.3
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.3e-156 556.6 336 78.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 6.5e-156 554.3 341 77.4
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 9.4e-155 550.4 334 79.6
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.7e-152 540.4 334 77.8
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 2.2e-151 539.3 420 69.3
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.8e-150 536.2 334 76.6
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 2.4e-150 535.8 378 74.1
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 7.0e-150 534.3 316 82.3
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 2.4e-142 509.2 363 72.2
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.1e-142 508.4 338 79.0
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 1.2e-141 506.9 295 86.1
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.6e-141 506.5 265 95.8
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 1.6e-141 506.5 265 95.8
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.2e-140 502.7 264 94.7
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 2.5e-139 499.2 271 90.0
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.4e-136 488.8 338 76.6
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 3.4e-136 488.8 338 76.3
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 5.7e-136 488.0 320 72.8
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.3e-123 445.7 344 66.9
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 6.8e-121 438.0 238 89.1
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 4.1e-118 428.7 216 99.1
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 9.2e-118 427.6 251 82.1
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.9e-115 419.9 311 63.7
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.5e-112 410.2 251 80.5
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.1e-110 404.1 248 78.6
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 9.8e-104 380.9 330 58.5
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 5.4e-102 375.2 315 57.8
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 4.2e-54 216.1 128 82.8
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.6e-45 186.4 168 60.1
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 4.1e-33 146.4 180 51.7
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 8.5e-31 138.7 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 1.8e-28 131.0 74 85.1
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 9.7e-27 125.2 73 83.6
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 5.3e-25 119.4 74 77.0
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 9.4e-22 108.6 104 60.6
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 5.9e-16 89.4 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 3.6e-13 80.1 99 48.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 2.0e-11 74.3 56 71.4
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.0e-11 74.3 42 81.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 4.9e-10 69.7 60 61.7
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 4.9e-10 69.7 60 61.7
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 2.4e-09 67.4 100 43.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 7.3e-06 55.8 34 76.5
Medtr5g030880 Medicago truncatula HOM05D000871 ORTHO05D036729 9.5e-06 55.5 56 57.1


User provided reference genes

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