Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G002940 Cucumis sativus L. HOM05D006978 ORTHO05D008723 6.3e-199 697.2 344 100.0
MELO3C017748.2 Cucumis melo HOM05D006978 ORTHO05D008723 4.5e-189 664.5 354 92.9
ClCG07G015370 Citrullus lanatus HOM05D006978 ORTHO05D008723 2.3e-177 625.5 347 89.9
Sed0026660 Sechium edule HOM05D006978 ORTHO05D008723 1.1e-139 500.4 345 74.5
CiPaw.05G106100 Carya illinoinensis HOM05D006978 ORTHO05D008723 4.0e-137 491.9 335 71.3
QL03p051315 Quercus lobata HOM05D006978 ORTHO05D008723 6.9e-137 491.1 342 69.6
Sabra03G0122900 Salix brachista HOM05D006978 ORTHO05D008723 1.2e-136 490.3 293 76.5
Hma1.2p1_0065F.1_g034960 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 3.4e-136 488.8 311 73.3
Potri.003G167600 Populus trichocarpa HOM05D006978 ORTHO05D008723 3.4e-136 488.8 300 75.3
Ciclev10031990m.g Citrus clementina HOM05D006978 ORTHO05D008723 1.7e-135 486.5 333 71.5
Dinv11704 Davidia involucrata HOM05D006978 ORTHO05D008723 2.2e-135 486.1 312 72.4
PSO017G5946 Papaver somniferum HOM05D006978 ORTHO05D008723 6.4e-135 484.6 328 70.7
GSVIVG01000920001 Vitis vinifera HOM05D006978 ORTHO05D008723 6.4e-135 484.6 295 76.3
FvH4_4g23290 Fragaria vesca HOM05D006978 ORTHO05D008723 1.9e-134 483.0 321 70.1
CSS0048975 Camellia sinensis var. sinensis HOM05D006978 ORTHO05D008723 3.2e-134 482.3 315 70.8
Cfa009396 Carpinus fangiana HOM05D006978 ORTHO05D008723 7.1e-134 481.1 346 69.7
FAN07G2913 Fragaria x ananassa HOM05D006978 ORTHO05D008723 7.1e-134 481.1 342 67.0
TAR371G0953 Trochodendron aralioides HOM05D006978 ORTHO05D008723 7.1e-134 481.1 324 71.3
Nn3g16378 Nelumbo nucifera HOM05D006978 ORTHO05D008723 1.2e-133 480.3 288 76.0
TWI36G1146 Tripterygium wilfordii HOM05D006978 ORTHO05D008723 1.6e-133 479.9 338 69.2
FAN17G0898 Fragaria x ananassa HOM05D006978 ORTHO05D008723 2.1e-133 479.6 342 66.7
RcHm_v2.0_Chr4g0429651 Rosa chinensis HOM05D006978 ORTHO05D008723 3.5e-133 478.8 285 77.2
Lj3A1073G42 Lonicera japonica HOM05D006978 ORTHO05D008723 7.9e-133 477.6 286 75.9
FAN12G0972 Fragaria x ananassa HOM05D006978 ORTHO05D008723 1.0e-132 477.2 321 69.5
PSO478G2402 Papaver somniferum HOM05D006978 ORTHO05D008723 1.8e-132 476.5 328 70.4
PGR102G2599 Punica granatum HOM05D006978 ORTHO05D008723 2.3e-132 476.1 331 70.4
Thecc.02G200200 Theobroma cacao HOM05D006978 ORTHO05D008723 3.0e-132 475.7 316 70.6
Actinidia09621 Actinidia chinensis HOM05D006978 ORTHO05D008723 1.1e-131 473.8 346 66.2
HanXRQChr08g0210001 Helianthus annuus HOM05D006978 ORTHO05D008723 1.9e-131 473.0 345 65.2
Lj1g0015384 Lotus japonicus HOM05D006978 ORTHO05D008723 2.5e-131 472.6 295 75.6
AUR62028894 Chenopodium quinoa HOM05D006978 ORTHO05D008723 3.3e-131 472.2 295 73.2
Duzib248G1034 Durio zibethinus HOM05D006978 ORTHO05D008723 4.3e-131 471.9 316 69.9
Psat3g186920 Pisum sativum HOM05D006978 ORTHO05D008723 9.6e-131 470.7 330 68.2
EL10Ac6g13545 Beta vulgaris HOM05D006978 ORTHO05D008723 1.3e-130 470.3 318 68.9
Ca_07142_v3 Cicer arietinum L. HOM05D006978 ORTHO05D008723 1.3e-130 470.3 300 74.3
Medtr7g022480 Medicago truncatula HOM05D006978 ORTHO05D008723 1.6e-130 469.9 309 71.8
Migut.K01011 Erythranthe guttata HOM05D006978 ORTHO05D008723 1.4e-129 466.8 311 69.5
Gorai.005G194100 Gossypium raimondii HOM05D006978 ORTHO05D008723 1.4e-129 466.8 296 73.0
Gohir.A03G149500 Gossypium hirsutum HOM05D006978 ORTHO05D008723 1.8e-129 466.5 296 73.0
TPR.G2900 Trifolium pratense HOM05D006978 ORTHO05D008723 1.8e-129 466.5 334 67.7
AUR62005659 Chenopodium quinoa HOM05D006978 ORTHO05D008723 2.4e-129 466.1 310 69.7
Solyc01g009970.3 Solanum lycopersicum HOM05D006978 ORTHO05D008723 5.3e-129 464.9 296 71.6
PGSC0003DMG400005222 Solanum tuberosum HOM05D006978 ORTHO05D008723 1.2e-128 463.8 295 71.9
CANSAT01G1132 Cannabis sativa HOM05D006978 ORTHO05D008723 1.5e-128 463.4 307 71.7
Thhalv10016892m.g Eutrema salsugineum HOM05D006978 ORTHO05D008723 1.5e-128 463.4 332 68.4
Gohir.D02G172400 Gossypium hirsutum HOM05D006978 ORTHO05D008723 1.5e-128 463.4 296 72.6
Sopen01g005540 Solanum pennellii HOM05D006978 ORTHO05D008723 2.0e-128 463.0 294 71.4
CAN.G373.1 Capsicum annuum HOM05D006978 ORTHO05D008723 2.6e-128 462.6 284 72.5
Cc11_g17300 Coffea canephora HOM05D006978 ORTHO05D008723 3.4e-128 462.2 290 71.7
VMungo1383G2882 Vigna mungo HOM05D000485 ORTHO05D000341 5.8e-128 461.5 290 74.1
CARHR129600 Cardamine hirsuta HOM05D006978 ORTHO05D008723 7.6e-128 461.1 293 73.7
Aqoxy5G03257 Aquilegia oxysepala HOM05D006978 ORTHO05D008723 1.0e-127 460.7 312 68.3
BcaC02g11649 Brassica carinata HOM05D006978 ORTHO05D008723 1.3e-127 460.3 322 68.6
Carub.0004s1713 Capsella rubella HOM05D006978 ORTHO05D008723 1.3e-127 460.3 310 70.6
Prupe.1G221700 Prunus persica HOM05D006978 ORTHO05D008723 1.7e-127 459.9 345 66.1
ECA233G0335 Erigeron canadensis HOM05D006978 ORTHO05D008723 2.2e-127 459.5 284 73.9
AL4G31500 Arabidopsis lyrata HOM05D006978 ORTHO05D008723 3.8e-127 458.8 291 73.2
Sp4g17670 Schrenkiella parvula HOM05D006978 ORTHO05D008723 6.5e-127 458.0 350 66.0
BcaB02g09429 Brassica carinata HOM05D006978 ORTHO05D008723 1.4e-126 456.8 347 64.8
Nitab4.5_0001771g0130 Nicotiana tabacum HOM05D006978 ORTHO05D008723 1.4e-126 456.8 283 73.5
DCAR_031207 Daucus carota HOM05D006978 ORTHO05D008723 1.9e-126 456.4 296 69.3
Nitab4.5_0004878g0040 Nicotiana tabacum HOM05D006978 ORTHO05D008723 3.2e-126 455.7 287 72.5
AT2G35450 Arabidopsis thaliana HOM05D006978 ORTHO05D008723 4.2e-126 455.3 336 67.3
BolC4t22921H Brassica oleracea HOM05D006978 ORTHO05D008723 7.1e-126 454.5 323 68.1
C04p12730 Brassica napus HOM05D006978 ORTHO05D008723 9.3e-126 454.1 323 68.1
MD16G1123900 Malus domestica HOM05D006978 ORTHO05D008723 9.3e-126 454.1 344 65.7
Oeu011352.1 Olea europaea HOM05D006978 ORTHO05D008723 2.7e-125 452.6 291 71.8
arahy.Tifrunner.gnm1.ann1.2517Z7 Arachis hypogaea HOM05D006978 ORTHO05D008723 3.5e-125 452.2 302 71.2
arahy.Tifrunner.gnm1.ann1.HCE1UU Arachis hypogaea HOM05D006978 ORTHO05D008723 3.5e-125 452.2 302 71.2
Eucgr.B03530 Eucalyptus grandis HOM05D006978 ORTHO05D008723 1.0e-124 450.7 346 65.9
A05p10300 Brassica napus HOM05D006978 ORTHO05D008723 2.3e-124 449.5 351 65.0
BraA05t19968Z Brassica rapa HOM05D006978 ORTHO05D008723 2.3e-124 449.5 323 67.5
Lalb_Chr10g0092011 Lupinus albus HOM05D006978 ORTHO05D008723 8.7e-124 447.6 323 67.8
Aa31LG9G13360 Aethionema arabicum HOM05D006978 ORTHO05D008723 4.3e-123 445.3 304 68.8
Os04g0391900 Oryza sativa ssp. japonica HOM05D006978 ORTHO05D008723 4.8e-122 441.8 287 68.6
Atru.BG.287.p Acer truncatum HOM05D006978 ORTHO05D008723 6.2e-122 441.4 271 74.5
THA.LOC104814198 Tarenaya hassleriana HOM05D006978 ORTHO05D008723 2.4e-121 439.5 338 62.7
Glyma.18G285000 Glycine max HOM05D006978 ORTHO05D008723 4.5e-120 435.3 317 64.4
SalBow2G2397 Salvia bowleyana HOM05D006978 ORTHO05D008723 4.6e-117 425.2 328 63.1
vmacro16091 Vaccinium macrocarpon HOM05D006978 ORTHO05D008723 1.3e-116 423.7 342 61.1
Sc11g0000330 Simmondsia chinensis HOM05D006978 ORTHO05D008723 1.1e-115 420.6 287 67.6
SEGI_15057 Sequoiadendron giganteum HOM05D006978 ORTHO05D008723 2.5e-115 419.5 295 65.4
Hund06110 Selenicereus undatus HOM05D006978 ORTHO05D008723 2.8e-114 416.0 356 61.5
Haze_12456 Corylus avellana HOM05D006978 ORTHO05D008723 6.5e-111 404.8 293 68.9
Glyma.18G284800 Glycine max HOM05D006978 ORTHO05D008723 2.5e-110 402.9 250 74.0
Phvul.008G016700 Phaseolus vulgaris HOM05D006978 ORTHO05D008723 1.4e-108 397.1 244 74.6
Atru.chr11.2376 Acer truncatum HOM05D006978 ORTHO05D008723 6.7e-108 394.8 245 73.5
Peaxi162Scf00255g00025 Petunia axillaris HOM05D006978 ORTHO05D008723 1.5e-107 393.7 248 71.8
Mapoly0133s0049 Marchantia polymorpha HOM05D006978 ORTHO05D008723 9.7e-107 391.0 294 59.2
Pp3c1_20610 Physcomitrium patens HOM05D006978 ORTHO05D008723 2.8e-106 389.4 286 62.2
SMO118G0021 Selaginella moellendorffii HOM05D006978 ORTHO05D008723 4.5e-104 382.1 292 59.9
ATR0582G006 Amborella trichopoda HOM05D006978 ORTHO05D008723 2.5e-102 376.3 248 68.5
Ah.02g130990 Amaranthus hybridus HOM05D006978 ORTHO05D008723 5.7e-99 365.2 313 58.8
CDE06G2364 Ceratophyllum demersum HOM05D006978 ORTHO05D008723 1.1e-97 360.9 338 55.0
AagrBONN_evm.TU.Sc2ySwM_117.2371 Anthoceros agrestis HOM05D006978 ORTHO05D008723 4.5e-96 355.5 282 58.9
Manes.13G007900 Manihot esculenta HOM05D006978 ORTHO05D008723 1.5e-91 340.5 241 66.8
Zm00001eb421220 Zea mays HOM05D006978 ORTHO05D008723 1.6e-80 303.9 195 69.2
MCO09G507 Micromonas commoda HOM05D006978 ORTHO05D008723 1.6e-72 277.3 306 46.7
MSTRG.476 Avicennia marina HOM05D006978 ORTHO05D008723 1.8e-65 253.8 158 72.8
Cpa.g.sc99.56 Carica papaya HOM05D006978 ORTHO05D008723 5.0e-55 219.2 144 68.8
MBI11_g38268_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 6.0e-48 195.7 110 75.5
Glyma.02G096500 Glycine max HOM05D006978 ORTHO05D008723 7.8e-48 195.3 114 72.8
Hma1.2p1_0065F.1_g034970 Hydrangea macrophylla HOM05D006978 ORTHO05D008723 8.1e-45 185.3 124 72.6
PRCOL_00001136 Prasinoderma coloniale HOM05D006978 ORTHO05D008723 2.0e-43 180.6 288 37.8
SalBow2G1646 Salvia bowleyana HOM05D006978 ORTHO05D008723 2.2e-42 177.2 105 78.1
MBI11_g38269_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 1.2e-32 144.8 111 58.6
Actinidia34017 Actinidia chinensis HOM05D006978 ORTHO05D008723 2.1e-29 134.0 156 44.9
arahy.Tifrunner.gnm1.ann1.5L80US Arachis hypogaea HOM05D006978 ORTHO05D008723 6.2e-29 132.5 87 75.9
Rhsim12G0096200 Rhododendron simsii HOM05D006978 ORTHO05D008723 4.0e-28 129.8 107 58.9
Cpa.g.sc99.55 Carica papaya HOM05D006978 ORTHO05D008723 6.9e-20 102.4 127 48.0
Peaxi162Scf00255g00026 Petunia axillaris HOM05D006978 ORTHO05D008723 9.6e-14 82.0 43 81.4
arahy.Tifrunner.gnm1.ann1.0RBU3Z Arachis hypogaea HOM05D006978 ORTHO05D008723 2.0e-11 74.3 55 54.5
RcHm_v2.0_Chr2g0135531 Rosa chinensis HOM05D006978 ORTHO05D008723 2.9e-10 70.5 39 76.9
MBI11_g31938_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 4.2e-09 66.6 49 59.2
MBI11_g31937_MAGBIO Magnolia biondii HOM05D006978 ORTHO05D008723 7.1e-09 65.9 42 66.7


User provided reference genes

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