Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 2.5e-133 478.8 239 100.0
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 7.7e-103 377.5 242 83.1
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 1.2e-82 310.5 229 71.6
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.7e-63 246.1 240 53.8
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.3e-62 243.8 252 52.4
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.0e-62 242.7 252 52.0
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 3.9e-62 242.3 252 52.8
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.5e-61 240.4 251 53.8
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.9e-61 240.0 258 51.9
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.3e-61 239.2 263 51.7
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 4.0e-59 232.3 242 55.0
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 4.0e-59 232.3 247 51.8
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 5.8e-58 228.4 247 55.1
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 7.5e-58 228.0 253 54.2
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 2.2e-57 226.5 249 49.4
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 2.2e-57 226.5 241 51.0
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 4.9e-57 225.3 253 53.8
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.4e-57 224.9 227 52.0
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 8.3e-57 224.6 247 51.0
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 8.3e-57 224.6 243 52.7
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.1e-56 224.2 239 53.1
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 4.1e-56 222.2 227 51.5
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 9.2e-56 221.1 246 54.5
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.2e-55 220.7 246 52.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.6e-55 220.3 229 51.5
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.6e-55 220.3 256 49.6
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.6e-55 220.3 252 53.6
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 6.0e-55 218.4 227 51.5
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.7e-54 216.9 222 52.7
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.7e-54 216.9 255 48.6
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 2.3e-54 216.5 253 49.0
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 3.0e-54 216.1 243 51.9
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.9e-54 215.7 242 51.7
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 5.1e-54 215.3 229 51.5
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 6.6e-54 214.9 227 50.2
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 1.1e-53 214.2 253 47.4
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.9e-53 213.4 222 50.5
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 2.5e-53 213.0 243 49.4
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.3e-53 212.6 228 50.9
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.3e-53 212.6 222 51.4
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 5.6e-53 211.8 247 48.2
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 9.5e-53 211.1 232 50.9
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 9.5e-53 211.1 227 52.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 1.6e-52 210.3 252 47.6
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.6e-52 210.3 236 51.3
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 3.6e-52 209.1 229 50.2
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.6e-52 209.1 253 45.8
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 4.7e-52 208.8 245 52.2
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 8.1e-52 208.0 237 49.8
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.4e-51 206.5 229 49.8
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.4e-51 206.5 229 51.1
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 5.2e-51 205.3 266 45.5
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 8.9e-51 204.5 248 47.6
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 8.9e-51 204.5 229 50.7
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.5e-50 203.8 234 52.1
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 3.4e-50 202.6 249 47.8
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 4.4e-50 202.2 248 48.0
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 5.8e-50 201.8 254 47.6
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 9.9e-50 201.1 236 47.5
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 9.9e-50 201.1 242 48.8
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 3.8e-49 199.1 231 47.2
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 3.8e-49 199.1 248 49.6
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 3.8e-49 199.1 247 50.6
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 4.9e-49 198.7 244 48.8
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 4.9e-49 198.7 256 47.3
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 6.4e-49 198.4 246 48.0
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 9.2e-48 194.5 251 46.2
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.2e-47 194.1 242 48.3
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.7e-47 193.0 250 46.4
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 2.7e-47 193.0 248 47.2
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 3.5e-47 192.6 239 49.8
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 7.8e-47 191.4 240 45.8
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 7.8e-47 191.4 242 44.6
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.0e-46 191.0 235 45.5
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.0e-46 191.0 248 46.4
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 2.3e-46 189.9 212 49.5
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 3.9e-46 189.1 252 44.0
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 6.6e-46 188.3 238 44.1
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 8.7e-46 188.0 268 44.0
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.1e-45 187.6 239 47.3
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.5e-45 187.2 294 40.8
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.9e-45 186.8 236 46.2
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 7.3e-45 184.9 238 46.6
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 9.6e-45 184.5 193 54.4
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.2e-44 184.1 193 54.4
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 3.6e-44 182.6 218 47.7
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.4e-43 180.6 249 47.4
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 2.4e-43 179.9 248 42.7
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.0e-43 179.1 245 46.1
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 6.9e-43 178.3 245 42.9
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 6.9e-43 178.3 188 51.6
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.3e-41 174.1 262 40.5
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.2e-41 173.3 128 68.0
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.9e-41 172.9 240 42.1
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 2.9e-41 172.9 236 42.4
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.9e-41 172.2 242 41.7
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 1.1e-40 171.0 144 59.0
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.4e-40 169.9 141 57.4
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 3.2e-40 169.5 239 41.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.4e-40 168.7 249 40.2
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 7.1e-40 168.3 264 41.7
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 9.3e-40 167.9 264 42.0
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 4.6e-39 165.6 269 40.1
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 6.0e-39 165.2 241 39.8
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 6.0e-39 165.2 240 40.8
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 7.8e-39 164.9 240 42.9
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.7e-38 163.7 236 44.1
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 3.0e-38 162.9 265 44.5
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 9.6e-37 157.9 243 40.7
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.4e-35 154.1 235 41.3
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 5.3e-35 152.1 240 39.2
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 6.9e-35 151.8 216 43.1
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 9.0e-35 151.4 240 39.6
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 9.0e-35 151.4 240 39.6
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 7.6e-34 148.3 240 39.2
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 7.6e-34 148.3 248 37.9
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 2.7e-31 139.8 278 34.2
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.9e-31 138.3 196 45.4
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 5.1e-30 135.6 139 47.5
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.7e-30 135.2 252 38.9
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 8.7e-30 134.8 212 43.4
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.5e-29 133.3 245 36.3
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 5.6e-29 132.1 180 46.1
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.3e-28 131.0 213 42.7
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 2.1e-28 130.2 138 46.4
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.8e-28 129.8 216 37.5
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.9e-25 119.8 180 40.0
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.4e-24 116.7 180 41.7
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 1.2e-23 114.4 128 43.8
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.6e-23 114.0 88 64.8
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.0e-22 111.3 84 66.7
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.0e-22 111.3 108 51.9
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 4.3e-21 105.9 55 92.7
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.8e-20 102.4 169 40.2
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.1e-19 101.3 154 43.5
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 9.0e-19 98.2 85 57.6
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 5.8e-18 95.5 65 67.7
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 1.3e-17 94.4 86 57.0
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 7.1e-16 88.6 101 49.5
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 5.1e-14 82.4 70 58.6
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 9.7e-13 78.2 59 62.7


User provided reference genes

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