Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 2133.6 1129 100.0
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 2103.2 1130 98.6
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1998.4 1100 95.4
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1982.6 1130 91.1
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1900.2 1131 87.4
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1781.5 1130 81.0
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1757.3 1135 80.7
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1756.1 1135 79.6
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1755.3 1134 79.2
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1755.0 1131 80.0
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1752.6 1136 79.4
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1751.1 1130 80.3
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1744.9 1130 79.6
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1744.6 1137 79.2
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1744.6 1139 79.4
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1738.4 1136 79.8
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1736.5 1131 78.2
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1736.1 1131 79.0
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1733.4 1130 79.1
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1732.2 1142 78.4
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1728.4 1134 78.7
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1725.3 1132 78.4
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1724.5 1132 79.6
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1724.5 1130 78.0
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1724.1 1132 79.5
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1720.7 1130 77.3
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1719.5 1130 77.2
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1718.4 1130 77.8
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1714.1 1130 77.1
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1713.4 1130 76.7
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1706.8 1132 77.6
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1704.5 1139 78.1
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1704.1 1139 76.6
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1702.6 1131 76.0
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1701.8 1129 76.8
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1699.5 1129 77.1
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1699.1 1131 76.0
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1697.9 1142 76.4
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1693.7 1182 73.9
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1688.7 1134 78.2
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1683.7 1134 76.2
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1681.8 1130 76.5
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1668.7 1133 75.9
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1661.4 1135 75.6
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1656.0 1129 75.4
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1650.6 1132 73.4
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1640.2 1133 74.1
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1637.9 1130 75.0
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1637.1 1134 73.8
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1636.7 1134 75.0
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1634.0 1132 74.4
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1631.7 1130 74.0
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1631.7 1132 73.4
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1620.5 1135 73.3
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1617.1 1136 72.4
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1613.2 1129 73.5
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1606.3 1133 72.2
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1602.8 1133 73.0
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1602.4 1026 78.7
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1592.4 1135 71.5
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1587.0 1143 72.0
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1585.9 1134 72.7
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1585.9 1140 71.0
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1583.5 1140 71.1
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1582.4 1012 81.4
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1582.0 1140 71.1
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1578.9 1140 70.8
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1134 71.8
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1575.8 1147 71.8
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1575.8 1147 71.8
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1573.1 1136 71.6
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1570.8 1132 71.4
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1569.7 1140 70.4
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1569.7 1130 71.7
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1565.4 1140 70.7
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1564.7 1140 70.6
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1564.7 1130 72.0
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1563.1 1133 72.4
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1562.7 1135 70.5
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1562.7 1140 70.5
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1562.7 1132 71.1
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1559.7 1133 70.4
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1558.9 1140 70.7
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1549.3 1137 71.6
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1539.2 1132 69.7
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1538.1 1135 68.9
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1533.9 1102 72.1
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1529.2 1136 68.8
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1528.5 1136 68.8
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1525.0 1135 69.0
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1517.7 1135 68.5
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1510.7 1068 72.4
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1496.5 1032 73.6
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1493.0 1068 72.6
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1453.7 921 80.6
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1422.1 1134 66.5
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1417.5 1151 65.2
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1414.1 1129 66.6
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1406.7 924 77.7
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1377.1 1096 66.1
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1355.5 1123 62.4
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1330.9 1065 63.8
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1313.5 920 73.3
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1308.1 889 74.6
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1303.1 1122 60.2
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1251.1 823 79.0
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1140.2 941 64.0
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1127.5 797 74.0
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1095.1 1070 52.3
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.2e-310 1070.1 1115 49.6
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 2.2e-296 1022.7 1073 48.4
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 5.9e-294 1014.6 669 77.4
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 7.2e-292 1007.7 1064 49.8
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 3.4e-286 988.8 760 67.0
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 6.6e-253 878.2 607 74.6
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 7.5e-249 864.8 939 53.9
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.2e-217 761.1 614 62.1
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 2.1e-214 750.4 1081 40.2
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.0e-165 588.6 421 73.2
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 7.5e-156 555.8 366 74.9
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 4.5e-145 520.0 436 64.9
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 4.7e-118 430.3 353 62.9
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 7.6e-100 369.8 316 62.3
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 5.1e-96 357.1 1186 28.0
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 5.4e-90 337.0 335 61.8
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 4.6e-89 334.0 312 59.9
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.0e-88 332.8 1146 27.6
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 7.4e-79 300.1 363 47.4
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 2.9e-67 261.5 326 46.6
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 4.2e-66 257.7 319 48.9
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 7.7e-36 157.1 156 62.2
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 8.5e-35 153.7 100 80.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 5.2e-32 144.4 666 23.1
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 3.1e-29 135.2 86 81.4
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 2.3e-27 129.0 86 77.9
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 5.0e-27 127.9 142 61.3
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 3.2e-21 108.6 69 71.0
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 9.2e-21 107.1 68 70.6
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 3.4e-07 62.0 45 73.3
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 1.3e-06 60.1 73 46.6


User provided reference genes

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