Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 5.9e-65 250.8 130 100.0
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.3e-61 238.8 130 94.6
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 5.4e-58 227.6 130 90.0
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 5.5e-55 217.6 128 83.6
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 4.7e-54 214.5 125 86.4
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.0e-53 213.4 126 84.1
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.8e-53 212.6 126 84.1
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 4.0e-53 211.5 128 80.5
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.5e-52 209.5 120 86.7
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 2.0e-52 209.1 120 83.3
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.0e-52 209.1 128 83.6
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.6e-52 208.8 120 85.0
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.6e-52 208.8 128 80.5
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 2.6e-52 208.8 126 82.5
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 2.6e-52 208.8 130 78.5
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 3.4e-52 208.4 127 78.0
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.4e-52 208.4 126 79.4
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.4e-52 208.4 126 83.3
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 5.7e-52 207.6 128 79.7
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 7.5e-52 207.2 122 82.8
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.5e-52 207.2 128 78.1
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 7.5e-52 207.2 128 78.1
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 9.8e-52 206.8 126 80.2
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 9.8e-52 206.8 128 81.2
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 9.8e-52 206.8 125 81.6
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.3e-51 206.5 120 84.2
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.3e-51 206.5 123 82.9
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.3e-51 206.5 122 82.8
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 2.2e-51 205.7 124 81.5
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.2e-51 205.7 128 80.5
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 2.2e-51 205.7 124 83.9
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 2.8e-51 205.3 118 84.7
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 3.7e-51 204.9 120 83.3
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 3.7e-51 204.9 129 80.6
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 4.9e-51 204.5 123 82.9
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 4.9e-51 204.5 123 82.9
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 4.9e-51 204.5 123 82.9
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.9e-51 204.5 122 82.0
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 6.3e-51 204.1 123 82.1
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 6.3e-51 204.1 123 82.1
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 6.3e-51 204.1 118 85.6
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.1e-50 203.4 128 78.1
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.4e-50 203.0 116 84.5
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.4e-50 203.0 118 84.7
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.4e-50 203.0 129 79.8
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.8e-50 202.6 122 80.3
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 1.8e-50 202.6 127 78.0
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.8e-50 202.6 118 83.9
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.4e-50 202.2 126 80.2
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.4e-50 202.2 122 82.8
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 3.1e-50 201.8 116 84.5
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 4.1e-50 201.4 123 81.3
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.1e-50 201.4 123 80.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.0e-50 200.7 123 79.7
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 9.2e-50 200.3 118 83.9
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 9.2e-50 200.3 118 81.4
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.2e-49 199.9 114 85.1
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 2.0e-49 199.1 122 80.3
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.7e-49 198.7 120 80.8
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.7e-49 198.7 121 77.7
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.7e-49 198.7 122 80.3
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.5e-49 198.4 118 79.7
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 3.5e-49 198.4 120 80.0
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.5e-49 198.0 124 76.6
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 7.8e-49 197.2 123 78.0
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 7.8e-49 197.2 123 78.0
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.0e-48 196.8 125 75.2
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.7e-48 196.1 125 78.4
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.9e-48 195.3 128 75.0
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 3.9e-48 194.9 126 73.8
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 8.6e-48 193.7 122 77.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.5e-47 193.0 123 76.4
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.5e-47 193.0 129 73.6
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.9e-47 192.6 127 74.0
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 2.5e-47 192.2 110 84.5
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 4.3e-47 191.4 128 74.2
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 4.3e-47 191.4 122 78.7
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 7.3e-47 190.7 119 74.8
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 9.5e-47 190.3 121 76.0
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.2e-46 189.9 123 75.6
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.2e-46 189.9 123 76.4
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-46 189.5 123 74.8
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.1e-46 189.1 120 76.7
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.1e-46 189.1 117 76.9
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 3.6e-46 188.3 123 74.8
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.6e-46 188.3 108 85.2
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.6e-46 188.3 120 75.8
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 4.7e-46 188.0 121 75.2
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 4.7e-46 188.0 128 68.0
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.0e-45 186.8 118 73.7
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.0e-45 186.8 117 76.1
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.8e-45 186.0 121 71.9
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 4.0e-45 184.9 108 82.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 4.0e-45 184.9 117 76.9
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 6.8e-45 184.1 105 82.9
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.2e-44 183.3 117 76.1
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.5e-44 183.0 122 74.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.6e-44 182.2 123 73.2
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 9.8e-44 180.3 127 70.1
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.4e-42 176.4 120 75.0
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 9.2e-42 173.7 119 73.1
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 9.2e-42 173.7 124 69.4
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.2e-41 173.3 124 71.0
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.0e-40 170.2 123 65.0
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.0e-40 170.2 98 85.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.0e-40 170.2 110 76.4
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.6e-40 167.5 99 82.8
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.1e-39 166.8 98 81.6
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 2.5e-39 165.6 105 73.3
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.5e-39 165.6 118 71.2
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 3.3e-39 165.2 121 72.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 5.6e-39 164.5 118 69.5
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 9.5e-39 163.7 100 79.0
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.6e-38 162.9 118 70.3
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 2.1e-38 162.5 98 78.6
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.8e-37 159.5 90 81.1
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 4.0e-37 158.3 120 67.5
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 5.2e-37 157.9 98 79.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 5.2e-37 157.9 98 79.6
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 6.8e-37 157.5 95 81.1
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 3.7e-35 151.8 120 63.3
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-34 150.2 104 70.2
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.4e-34 149.1 127 66.1
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 2.4e-34 149.1 128 60.9
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 7.0e-34 147.5 119 64.7
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 9.2e-34 147.1 122 63.9
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.7e-33 145.6 86 80.2
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 3.0e-32 142.1 113 63.7
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 5.1e-32 141.4 109 64.2
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.6e-32 141.0 84 77.4
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-31 140.2 93 73.1
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.2e-30 136.7 112 59.8
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 8.1e-30 134.0 83 74.7
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.1e-29 133.7 83 74.7
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 8.9e-29 130.6 95 67.4
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 3.7e-27 125.2 119 55.5
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 3.7e-27 125.2 115 53.9
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 3.7e-27 125.2 113 52.2
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 4.9e-27 124.8 117 52.1
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 4.9e-27 124.8 88 67.0
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 8.3e-27 124.0 116 57.8
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-26 123.6 84 72.6
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.4e-26 123.2 113 53.1
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 9.2e-26 120.6 115 52.2
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.6e-25 119.8 118 49.2
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 2.1e-25 119.4 121 54.5
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.1e-25 119.4 117 54.7
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 2.7e-25 119.0 115 53.0
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.1e-24 114.8 100 57.0
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 5.6e-23 111.3 76 78.9
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.1e-21 107.1 134 43.3
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.4e-21 105.9 132 44.7
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 6.8e-21 104.4 61 83.6
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 2.1e-17 92.8 66 65.2
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 3.5e-09 65.5 75 46.7
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.0e-08 63.9 35 80.0
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 5.1e-08 61.6 53 49.1
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 1.9e-07 59.7 111 36.9
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.9e-07 59.7 111 36.0
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 9.6e-07 57.4 111 33.3
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 1.3e-06 57.0 111 32.4
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 2.1e-06 56.2 111 34.2
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 2.1e-06 56.2 111 34.2
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 2.8e-06 55.8 111 33.3
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 2.8e-06 55.8 111 33.3
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 3.6e-06 55.5 111 32.4
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 3.6e-06 55.5 111 35.1
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 4.8e-06 55.1 114 32.5
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 8.1e-06 54.3 111 36.0
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 8.1e-06 54.3 111 32.4


User provided reference genes

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