Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 5.3e-62 241.1 146 100.0
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 3.9e-57 224.9 120 93.3
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 7.1e-51 204.1 118 86.4
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 2.5e-35 152.5 123 69.1
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 2.0e-21 106.3 108 52.8
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 3.8e-20 102.1 80 67.5
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 9.4e-19 97.4 118 47.5
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 1.2e-18 97.1 84 57.1
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 2.1e-18 96.3 85 62.4
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 6.1e-18 94.7 112 48.2
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 6.1e-18 94.7 103 53.4
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 6.1e-18 94.7 80 62.5
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 8.0e-18 94.4 86 55.8
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 8.0e-18 94.4 97 55.7
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 1.8e-17 93.2 73 67.1
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 1.8e-17 93.2 126 46.8
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 5.2e-17 91.7 83 62.7
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 5.2e-17 91.7 94 54.3
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 6.7e-17 91.3 93 57.0
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 6.7e-17 91.3 84 59.5
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 8.8e-17 90.9 70 64.3
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 8.8e-17 90.9 72 66.7
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 8.8e-17 90.9 116 47.4
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 1.1e-16 90.5 83 57.8
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.1e-16 90.5 93 55.9
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 1.1e-16 90.5 111 48.6
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.5e-16 90.1 93 55.9
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 1.5e-16 90.1 62 74.2
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 2.0e-16 89.7 74 63.5
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 2.0e-16 89.7 74 66.2
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.6e-16 89.4 93 55.9
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 2.6e-16 89.4 116 46.6
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 3.3e-16 89.0 92 56.5
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 4.4e-16 88.6 78 61.5
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 5.7e-16 88.2 105 49.5
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 7.4e-16 87.8 63 65.1
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 7.4e-16 87.8 64 64.1
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 9.7e-16 87.4 70 65.7
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 9.7e-16 87.4 67 67.2
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 1.3e-15 87.0 79 57.0
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 1.7e-15 86.7 106 47.2
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 2.2e-15 86.3 82 54.9
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 3.7e-15 85.5 71 60.6
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 4.8e-15 85.1 105 45.7
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 6.3e-15 84.7 79 57.0
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 8.2e-15 84.3 64 67.2
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 8.2e-15 84.3 64 60.9
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.1e-14 84.0 79 49.4
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 1.1e-14 84.0 117 43.6
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 3.1e-14 82.4 74 55.4
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 7.0e-14 81.3 74 56.8
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 7.0e-14 81.3 66 62.1
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 7.0e-14 81.3 114 43.9
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 9.1e-14 80.9 62 58.1
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 1.2e-13 80.5 73 53.4
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 1.6e-13 80.1 74 51.4
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 2.0e-13 79.7 80 53.8
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 3.5e-13 79.0 75 54.7
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 3.5e-13 79.0 75 54.7
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 4.5e-13 78.6 105 42.9
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 4.5e-13 78.6 105 42.9
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 4.5e-13 78.6 105 42.9
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 5.9e-13 78.2 64 64.1
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 5.9e-13 78.2 80 53.8
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 1.3e-12 77.0 64 54.7
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 1.3e-12 77.0 61 59.0
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.7e-12 76.6 58 60.3
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 2.2e-12 76.3 59 62.7
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 2.2e-12 76.3 61 54.1
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 2.9e-12 75.9 68 52.9
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 3.8e-12 75.5 81 49.4
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 3.8e-12 75.5 81 49.4
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 3.8e-12 75.5 73 56.2
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 8.5e-12 74.3 106 38.7
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 8.5e-12 74.3 60 60.0
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 1.1e-11 73.9 72 54.2
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 1.5e-11 73.6 59 61.0
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 1.5e-11 73.6 93 47.3
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 2.5e-11 72.8 92 44.6
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 2.5e-11 72.8 92 44.6
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 2.5e-11 72.8 74 50.0
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 3.2e-11 72.4 73 53.4
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 7.2e-11 71.2 66 51.5
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 7.2e-11 71.2 58 58.6
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 9.4e-11 70.9 58 62.1
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 1.6e-10 70.1 96 42.7
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 2.1e-10 69.7 58 58.6
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 2.7e-10 69.3 57 59.6
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 3.6e-10 68.9 58 53.4
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 8.0e-10 67.8 84 45.2
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 1.8e-09 66.6 56 58.9
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 2.3e-09 66.2 51 54.9
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 8.8e-09 64.3 48 58.3
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 8.8e-09 64.3 52 53.8
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 3.3e-08 62.4 76 46.1
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 4.4e-08 62.0 46 60.9
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 1.7e-07 60.1 60 48.3


User provided reference genes

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