Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 9.7e-240 833.2 450 100.0
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 3.1e-222 775.0 450 92.4
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 2.1e-178 629.4 530 69.1
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 3.5e-157 558.9 465 68.4
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 5.4e-142 508.4 459 65.1
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.7e-135 486.9 455 59.1
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 4.9e-127 458.8 475 60.6
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 8.4e-127 458.0 464 59.3
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 9.3e-126 454.5 457 59.5
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 6.7e-124 448.4 470 59.1
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 2.8e-122 443.0 464 55.8
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 5.3e-121 438.7 462 59.1
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 3.4e-120 436.0 470 58.5
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 8.5e-119 431.4 464 56.2
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 9.4e-118 427.9 473 58.4
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.4e-116 424.1 465 57.4
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 1.4e-116 424.1 466 54.7
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 5.7e-115 418.7 481 54.9
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 1.0e-111 407.9 478 52.3
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 2.2e-111 406.8 467 55.2
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 1.6e-109 400.6 475 54.9
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 2.7e-109 399.8 445 53.7
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.3e-108 396.7 445 53.5
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 2.6e-107 393.3 467 55.2
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 3.7e-106 389.4 444 52.0
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 9.1e-105 384.8 479 49.9
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.0e-103 381.3 467 51.6
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.1e-102 377.9 449 51.4
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.5e-102 376.7 512 48.0
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.4e-100 370.9 455 50.3
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 2.6e-99 366.7 452 48.9
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 7.4e-99 365.2 625 43.8
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 9.7e-99 364.8 414 53.4
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.3e-98 364.4 493 46.5
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 1.8e-97 360.5 454 50.2
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 3.1e-97 359.8 446 48.0
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 3.5e-96 356.3 463 52.1
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 7.7e-96 355.1 511 49.3
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.0e-95 352.4 464 47.0
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 5.5e-94 349.0 459 49.9
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 5.5e-94 349.0 459 49.9
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 7.2e-94 348.6 474 50.2
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.6e-93 347.4 439 48.3
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 1.0e-92 344.7 439 51.0
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 1.8e-92 344.0 439 47.8
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 3.0e-92 343.2 436 47.5
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 3.0e-92 343.2 382 51.6
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.5e-91 340.9 460 49.1
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.0e-91 340.5 439 47.4
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.4e-89 334.3 448 48.2
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.0e-88 330.5 450 51.6
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 5.9e-88 328.9 450 48.4
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 5.9e-88 328.9 460 46.1
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 1.7e-87 327.4 456 46.5
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.7e-87 327.4 456 46.3
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 2.2e-87 327.0 468 49.1
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 2.9e-87 326.6 455 46.2
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 2.9e-87 326.6 439 52.4
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 2.9e-87 326.6 457 51.0
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 6.5e-87 325.5 450 51.6
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 6.5e-87 325.5 429 51.7
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.1e-86 324.7 450 50.9
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.5e-86 324.3 402 49.8
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.9e-86 323.9 450 51.1
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 3.2e-86 323.2 411 47.9
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 4.2e-86 322.8 454 46.3
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 9.4e-86 321.6 299 56.5
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.6e-85 320.9 468 46.2
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.6e-85 320.9 351 51.3
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 2.1e-85 320.5 459 48.6
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 2.1e-85 320.5 451 45.9
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 2.7e-85 320.1 448 45.3
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 6.1e-85 318.9 451 45.7
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 5.2e-84 315.8 415 49.2
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.3e-82 311.2 461 44.7
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.8e-82 310.1 426 46.7
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 3.7e-82 309.7 448 45.8
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 3.7e-82 309.7 372 47.6
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.1e-81 308.1 401 47.6
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 3.1e-81 306.6 397 45.3
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 4.1e-81 306.2 464 45.0
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 7.0e-81 305.4 446 45.3
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 2.7e-80 303.5 467 47.3
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 4.5e-80 302.8 456 42.8
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 5.9e-80 302.4 413 44.8
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 5.9e-80 302.4 471 43.7
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.0e-79 301.6 487 44.8
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 1.3e-79 301.2 415 46.7
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 2.9e-79 300.1 447 44.5
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.9e-79 300.1 437 45.1
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 3.8e-79 299.7 356 49.2
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 6.6e-79 298.9 415 46.5
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 8.6e-79 298.5 412 45.9
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.5e-78 297.7 455 43.7
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 3.3e-78 296.6 416 47.4
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 3.3e-78 296.6 419 46.5
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 5.5e-78 295.8 431 44.5
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 7.2e-78 295.4 365 48.2
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.2e-77 294.7 431 44.1
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 1.6e-77 294.3 416 46.2
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 4.7e-77 292.7 390 46.9
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.0e-76 291.6 411 46.0
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 5.2e-76 289.3 460 44.1
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 5.2e-76 289.3 365 47.7
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.4e-75 286.6 434 49.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 4.4e-75 286.2 431 44.5
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 6.3e-74 282.3 474 40.7
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 3.2e-73 280.0 466 44.4
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 2.7e-72 276.9 439 43.5
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 4.5e-72 276.2 262 56.1
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 1.3e-71 274.6 372 45.4
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.7e-71 274.2 471 40.8
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.7e-71 274.2 435 43.0
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 2.3e-71 273.9 435 42.8
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 6.6e-71 272.3 437 42.8
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 2.8e-69 266.9 398 45.5
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 3.6e-69 266.5 360 48.6
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 3.6e-69 266.5 196 67.3
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 6.1e-69 265.8 430 43.0
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 3.4e-67 260.0 464 42.7
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 2.2e-66 257.3 204 63.2
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.6e-64 251.1 304 49.0
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.0e-64 250.8 485 39.2
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.0e-64 250.8 485 39.2
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 2.3e-63 247.3 294 50.7
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.1e-62 245.0 415 41.4
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 6.8e-60 235.7 442 38.0
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.2e-59 235.0 273 52.0
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 8.3e-58 228.8 418 39.2
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.4e-57 228.0 140 75.7
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 1.3e-50 204.9 371 41.2
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 6.4e-50 202.6 332 47.3
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.2e-49 200.3 113 85.0
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 4.0e-44 183.3 337 42.7
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.0e-44 183.3 117 74.4
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.0e-44 183.3 117 74.4
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 4.9e-42 176.4 101 81.2
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 9.6e-38 162.2 116 71.6
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.5e-35 154.8 95 76.8
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 6.4e-34 149.4 383 35.5
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.4e-33 148.3 142 50.0
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 2.1e-32 144.4 138 53.6
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.7e-31 141.4 329 39.2
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 5.6e-30 136.3 76 82.9
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.6e-27 127.5 332 35.2
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 3.9e-23 113.6 233 36.1
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 8.7e-23 112.5 64 78.1
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 9.6e-22 109.0 241 36.5
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 2.2e-18 97.8 66 71.2
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 1.4e-17 95.1 106 48.1
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 1.2e-16 92.0 102 46.1
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 3.5e-16 90.5 88 51.1
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.8e-15 88.2 61 65.6
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 5.7e-14 83.2 55 72.7
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.0e-11 74.7 92 44.6
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.7e-10 71.6 35 85.7
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 7.1e-09 66.2 52 57.7
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 9.3e-09 65.9 77 46.8
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 2.1e-08 64.7 104 35.6
Ca_31319_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.0e-07 62.4 77 45.5
EL10Ac8g20467 Beta vulgaris HOM05D003936 ORTHO05D004747 1.3e-07 62.0 171 32.7
EL10Ac9g21844 Beta vulgaris HOM05D001651 ORTHO05D000277 5.1e-07 60.1 209 30.6
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 5.1e-07 60.1 35 65.7
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 7.4e-06 56.2 102 31.4


User provided reference genes

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