Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.1e-158 563.1 274 100.0
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.8e-140 502.7 285 89.1
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.4e-124 449.1 282 80.9
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 5.0e-114 414.8 274 75.9
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 4.5e-99 365.2 227 77.5
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.7e-98 363.2 213 79.8
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.3e-98 362.8 220 75.9
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.5e-97 360.1 225 76.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 5.5e-97 358.2 217 77.0
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 7.2e-97 357.8 261 69.0
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 3.6e-96 355.5 208 79.3
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 8.0e-96 354.4 247 71.3
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.0e-96 354.4 227 74.4
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.8e-95 353.2 263 66.5
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 2.3e-95 352.8 209 78.9
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 3.0e-95 352.4 227 74.0
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.0e-95 352.4 225 74.7
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 4.0e-95 352.1 209 78.5
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 6.8e-95 351.3 221 74.2
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 6.8e-95 351.3 250 69.6
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.4e-94 349.0 226 74.3
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 3.4e-94 349.0 214 74.8
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 5.7e-94 348.2 258 67.4
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 7.5e-94 347.8 208 76.9
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.7e-93 346.7 242 69.8
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 2.2e-93 346.3 211 76.8
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 6.3e-93 344.7 255 68.6
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 8.3e-93 344.4 217 74.2
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.4e-92 343.6 251 68.1
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 4.1e-92 342.0 255 66.7
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 5.4e-92 341.7 241 69.3
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 5.4e-92 341.7 270 66.7
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 7.0e-92 341.3 255 68.6
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 9.2e-92 340.9 251 67.3
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.6e-91 340.1 278 63.3
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.6e-91 340.1 249 67.5
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.6e-91 340.1 252 65.5
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.7e-91 339.3 264 66.3
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 2.7e-91 339.3 208 76.0
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.8e-91 337.8 264 65.5
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.0e-90 337.4 267 63.3
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.0e-90 337.4 251 66.9
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.3e-90 336.3 236 71.2
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.3e-90 336.3 236 71.2
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.3e-90 336.3 223 70.9
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.9e-90 335.9 245 68.2
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.0e-90 335.1 251 66.5
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 5.0e-90 335.1 226 73.0
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 6.6e-90 334.7 250 69.6
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 6.6e-90 334.7 267 64.0
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 8.6e-90 334.3 267 65.5
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 8.6e-90 334.3 267 65.5
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 8.6e-90 334.3 236 69.9
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-89 333.6 267 64.0
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.5e-89 333.6 267 64.0
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.5e-89 333.6 221 72.4
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.9e-89 333.2 250 66.0
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.9e-89 333.2 210 73.8
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.9e-89 333.2 254 65.7
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 2.5e-89 332.8 267 65.2
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 3.3e-89 332.4 260 64.6
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 5.6e-89 331.6 256 64.1
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 5.6e-89 331.6 262 63.4
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 7.3e-89 331.3 267 63.7
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 9.5e-89 330.9 253 65.6
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.2e-88 330.5 219 73.5
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 1.0e-87 327.4 218 68.3
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.4e-87 327.0 242 66.5
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.8e-87 326.6 263 63.1
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 3.0e-87 325.9 262 63.7
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 4.0e-87 325.5 254 63.8
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 6.8e-87 324.7 217 67.7
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 8.9e-87 324.3 251 65.7
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 8.9e-87 324.3 217 71.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 8.9e-87 324.3 217 71.9
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 8.9e-87 324.3 220 69.5
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.4e-86 322.4 210 72.9
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 4.4e-86 322.0 209 75.1
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 7.5e-86 321.2 247 64.4
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.2e-85 319.7 209 71.8
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 2.2e-85 319.7 256 66.0
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 2.9e-85 319.3 212 70.8
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 6.4e-85 318.2 206 72.8
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 6.4e-85 318.2 212 70.8
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.1e-84 317.4 242 64.9
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-84 316.6 236 67.8
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-84 316.6 236 67.8
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.8e-84 316.6 211 70.1
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 4.1e-84 315.5 222 69.4
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 4.1e-84 315.5 236 64.8
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 7.0e-84 314.7 221 68.3
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.6e-83 313.5 232 67.2
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 5.9e-83 311.6 232 66.8
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.9e-83 311.6 210 69.5
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.3e-82 309.7 217 68.2
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.0e-82 309.3 247 63.2
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.9e-82 308.9 216 68.5
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 6.6e-82 308.1 211 69.7
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 6.6e-82 308.1 210 69.0
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 8.6e-82 307.8 209 69.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 8.6e-82 307.8 236 64.0
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 8.6e-82 307.8 232 65.9
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 4.3e-81 305.4 246 65.9
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 7.3e-81 304.7 249 62.7
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.2e-80 303.9 251 61.4
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.6e-80 303.5 262 60.7
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.6e-80 303.5 262 60.7
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.8e-80 302.8 211 68.7
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 3.6e-80 302.4 216 67.1
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 3.6e-80 302.4 253 60.9
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 3.6e-80 302.4 253 60.9
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.7e-80 302.0 248 61.3
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 6.2e-80 301.6 207 71.0
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 8.0e-80 301.2 207 71.0
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 2.3e-79 299.7 223 66.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.0e-79 298.9 244 62.7
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 4.0e-79 298.9 256 60.5
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.2e-79 298.5 248 60.1
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 6.8e-79 298.1 261 60.5
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 6.8e-79 298.1 205 70.2
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 6.8e-79 298.1 223 66.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 6.8e-79 298.1 216 67.1
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 1.2e-78 297.4 218 65.1
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-78 297.4 218 65.1
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.2e-78 297.4 218 65.1
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.5e-78 297.0 224 66.1
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 2.6e-78 296.2 218 64.7
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 2.6e-78 296.2 218 64.7
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 2.6e-78 296.2 218 64.7
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 3.4e-78 295.8 224 64.3
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 3.4e-78 295.8 211 66.8
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 4.4e-78 295.4 248 59.7
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.2e-77 293.1 207 69.1
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 3.7e-77 292.4 209 68.9
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.4e-76 290.4 170 79.4
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 1.9e-76 290.0 199 69.8
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.3e-74 283.9 207 67.1
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 3.9e-74 282.3 240 61.7
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 4.3e-73 278.9 222 62.2
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 8.1e-72 274.6 178 73.0
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 4.9e-69 265.4 169 72.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 8.6e-66 254.6 198 65.7
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.5e-65 253.8 226 58.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 2.0e-62 243.4 217 57.1
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.7e-61 240.4 277 49.8
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 4.1e-60 235.7 218 52.8
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 5.4e-60 235.3 218 56.4
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.2e-59 234.2 218 55.0
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.5e-54 217.2 132 78.8
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.4e-54 215.7 132 78.0
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-52 210.7 211 53.6
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 4.6e-51 205.7 128 76.6
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 6.0e-51 205.3 208 50.0
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 4.3e-49 199.1 218 47.2
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.4e-44 183.3 168 51.2
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 9.9e-38 161.4 178 51.1
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 8.4e-37 158.3 139 55.4
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 6.7e-26 122.1 122 50.0
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.5e-25 120.2 71 81.7
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.3e-16 89.0 64 60.9
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.7e-13 80.9 89 46.1
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.1e-11 73.9 68 50.0
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 6.1e-11 72.4 64 51.6
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 3.9e-10 69.7 44 79.5
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 4.4e-09 66.2 80 50.0
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 9.7e-09 65.1 73 47.9
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.4e-07 60.5 42 66.7


User provided reference genes

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