Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G001540 Cucumis sativus L. HOM05D002758 ORTHO05D002885 8.0e-41 170.6 133 100.0
MELO3C017886.2 Cucumis melo HOM05D002758 ORTHO05D002885 1.0e-35 153.7 133 92.5
ClCG07G012650 Citrullus lanatus HOM05D002758 ORTHO05D002885 1.3e-30 136.7 136 70.6
Sed0015979 Sechium edule HOM05D002758 ORTHO05D002885 8.0e-25 117.5 133 61.7
Sed0016112 Sechium edule HOM05D002758 ORTHO05D002885 1.0e-19 100.5 133 58.6
Manes.11G055700 Manihot esculenta HOM05D002758 ORTHO05D002885 1.9e-18 96.3 133 50.4
THA.LOC104815531 Tarenaya hassleriana HOM05D002758 ORTHO05D002885 2.8e-17 92.4 134 50.7
BcaB02g10984 Brassica carinata HOM05D002758 ORTHO05D002885 1.0e-16 90.5 136 53.7
Thecc.06G021700 Theobroma cacao HOM05D002758 ORTHO05D002885 1.2e-15 87.0 135 43.0
Thhalv10011857m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 2.0e-15 86.3 136 50.7
CANSAT56G1388 Cannabis sativa HOM05D002758 ORTHO05D002885 2.6e-15 85.9 141 41.1
Atru.chr1.2990 Acer truncatum HOM05D002758 ORTHO05D002885 4.4e-15 85.1 131 42.7
Carub.0001s4153 Capsella rubella HOM05D002758 ORTHO05D002885 4.4e-15 85.1 137 50.4
Cpa.g.sc10.256 Carica papaya HOM05D002758 ORTHO05D002885 5.7e-15 84.7 134 53.0
AL1G60820 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 7.5e-15 84.3 137 48.9
A05p18910 Brassica napus HOM05D002758 ORTHO05D002885 7.5e-15 84.3 136 42.6
BraA06t23394Z Brassica rapa HOM05D002758 ORTHO05D002885 7.5e-15 84.3 137 49.6
COL.COLO4_12950 Corchorus olitorius HOM05D002758 ORTHO05D002885 7.5e-15 84.3 136 42.6
CARHR042690 Cardamine hirsuta HOM05D002758 ORTHO05D002885 9.8e-15 84.0 136 48.5
BcaC08g43429 Brassica carinata HOM05D002758 ORTHO05D002885 1.3e-14 83.6 137 43.1
BcaC08g44003 Brassica carinata HOM05D002758 ORTHO05D002885 1.3e-14 83.6 136 42.6
A06p01750 Brassica napus HOM05D002758 ORTHO05D002885 1.3e-14 83.6 137 49.6
C06p14110 Brassica napus HOM05D002758 ORTHO05D002885 1.3e-14 83.6 136 48.5
BolC6t36589H Brassica oleracea HOM05D002758 ORTHO05D002885 1.3e-14 83.6 136 48.5
Sp1g39120 Schrenkiella parvula HOM05D002758 ORTHO05D002885 1.3e-14 83.6 136 50.7
Gohir.A10G074300 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.2e-14 82.8 137 42.3
Duzib235G1225 Durio zibethinus HOM05D002758 ORTHO05D002885 2.8e-14 82.4 136 41.2
BcaC08g43430 Brassica carinata HOM05D002758 ORTHO05D002885 3.7e-14 82.0 135 43.7
Gohir.D10G077100 Gossypium hirsutum HOM05D002758 ORTHO05D002885 3.7e-14 82.0 136 41.9
TWI18G1221 Tripterygium wilfordii HOM05D002758 ORTHO05D002885 3.7e-14 82.0 139 41.7
AT1G52565 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 4.9e-14 81.6 135 51.9
BolC6t35882H Brassica oleracea HOM05D002758 ORTHO05D002885 4.9e-14 81.6 137 42.3
CSS0041896 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 6.3e-14 81.3 133 38.3
CiPaw.01G246400 Carya illinoinensis HOM05D002758 ORTHO05D002885 1.4e-13 80.1 142 44.4
BraA05t20788Z Brassica rapa HOM05D002758 ORTHO05D002885 2.4e-13 79.3 134 47.0
Manes.04G113800 Manihot esculenta HOM05D002758 ORTHO05D002885 5.4e-13 78.2 145 42.1
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 5.4e-13 78.2 135 40.0
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 9.2e-13 77.4 135 39.3
C06p07990 Brassica napus HOM05D002758 ORTHO05D002885 1.2e-12 77.0 70 55.7
Gorai.011G083300 Gossypium raimondii HOM05D002758 ORTHO05D002885 1.2e-12 77.0 136 41.2
Prupe.3G084900 Prunus persica HOM05D002758 ORTHO05D002885 1.2e-12 77.0 136 41.9
QL09p026717 Quercus lobata HOM05D002758 ORTHO05D002885 1.6e-12 76.6 129 51.2
CiPaw.02G156300 Carya illinoinensis HOM05D002758 ORTHO05D002885 3.5e-12 75.5 135 41.5
Aa31LG8G2960 Aethionema arabicum HOM05D002758 ORTHO05D002885 7.8e-12 74.3 141 46.8
Gohir.A05G125833 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.0e-11 73.9 136 40.4
Gohir.A05G125900 Gossypium hirsutum HOM05D002758 ORTHO05D002885 1.0e-11 73.9 136 40.4
Ciclev10026775m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.7e-11 73.2 134 40.3
Gorai.009G130900 Gossypium raimondii HOM05D002758 ORTHO05D002885 2.3e-11 72.8 134 41.8
Potri.001G192800 Populus trichocarpa HOM05D002758 ORTHO05D002885 2.3e-11 72.8 146 38.4
Gohir.D05G126800 Gossypium hirsutum HOM05D002758 ORTHO05D002885 2.9e-11 72.4 136 39.7
PGR031G0668 Punica granatum HOM05D002758 ORTHO05D002885 2.9e-11 72.4 132 40.9
Thhalv10021746m.g Eutrema salsugineum HOM05D002758 ORTHO05D002885 5.0e-11 71.6 131 38.2
vmacro18989 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 5.0e-11 71.6 136 36.8
FAN02G3379 Fragaria x ananassa HOM05D002758 ORTHO05D002885 6.6e-11 71.2 135 40.0
Duzib160G0702 Durio zibethinus HOM05D002758 ORTHO05D002885 8.6e-11 70.9 137 39.4
Carub.0003s1550 Capsella rubella HOM05D002758 ORTHO05D002885 1.1e-10 70.5 132 37.9
FAN14G2484 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.1e-10 70.5 135 40.0
FAN05G1526 Fragaria x ananassa HOM05D002758 ORTHO05D002885 1.5e-10 70.1 133 39.8
GSVIVG01017318001 Vitis vinifera HOM05D002758 ORTHO05D002885 1.5e-10 70.1 141 39.0
Cfa001976 Carpinus fangiana HOM05D002758 ORTHO05D002885 3.3e-10 68.9 135 41.5
RcHm_v2.0_Chr2g0135861 Rosa chinensis HOM05D002758 ORTHO05D002885 3.3e-10 68.9 137 39.4
FvH4_6g29910 Fragaria vesca HOM05D002758 ORTHO05D002885 4.3e-10 68.6 135 39.3
AL3G28420 Arabidopsis lyrata HOM05D002758 ORTHO05D002885 5.6e-10 68.2 132 36.4
CARHR090850 Cardamine hirsuta HOM05D002758 ORTHO05D002885 5.6e-10 68.2 132 36.4
Dinv30594 Davidia involucrata HOM05D002758 ORTHO05D002885 5.6e-10 68.2 135 39.3
Actinidia01753 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.2e-09 67.0 139 39.6
Nitab4.5_0005728g0010 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.2e-09 67.0 143 39.9
arahy.Tifrunner.gnm1.ann1.3WRP69 Arachis hypogaea HOM05D002758 ORTHO05D002885 2.8e-09 65.9 135 50.4
arahy.Tifrunner.gnm1.ann1.A8WRUN Arachis hypogaea HOM05D002758 ORTHO05D002885 2.8e-09 65.9 135 50.4
Peaxi162Scf00332g00756 Petunia axillaris HOM05D002758 ORTHO05D002885 2.8e-09 65.9 137 39.4
AT3G15760 Arabidopsis thaliana HOM05D002758 ORTHO05D002885 3.6e-09 65.5 132 36.4
Cc04_g04270 Coffea canephora HOM05D002758 ORTHO05D002885 3.6e-09 65.5 67 53.7
TAR383G0328 Trochodendron aralioides HOM05D002758 ORTHO05D002885 3.6e-09 65.5 67 49.3
Aqoxy7G03691 Aquilegia oxysepala HOM05D002758 ORTHO05D002885 4.7e-09 65.1 137 36.5
A01p38340 Brassica napus HOM05D002758 ORTHO05D002885 6.1e-09 64.7 135 52.6
BraA01t03885Z Brassica rapa HOM05D002758 ORTHO05D002885 6.1e-09 64.7 135 51.9
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 6.1e-09 64.7 135 37.8
BcaB04g20905 Brassica carinata HOM05D002758 ORTHO05D002885 8.0e-09 64.3 132 36.4
Actinidia15774 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.0e-08 63.9 138 37.7
BcaC09g48555 Brassica carinata HOM05D002758 ORTHO05D002885 1.0e-08 63.9 135 36.3
C01p48670 Brassica napus HOM05D002758 ORTHO05D002885 1.0e-08 63.9 135 36.3
BolC1t04821H Brassica oleracea HOM05D002758 ORTHO05D002885 1.0e-08 63.9 135 36.3
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.0e-08 63.9 135 37.8
Nitab4.5_0001764g0140 Nicotiana tabacum HOM05D002758 ORTHO05D002885 1.4e-08 63.5 136 38.2
QL05p029455 Quercus lobata HOM05D002758 ORTHO05D002885 1.8e-08 63.2 136 39.7
Migut.I00776 Erythranthe guttata HOM05D002758 ORTHO05D002885 4.0e-08 62.0 138 34.8
Sp3g14090 Schrenkiella parvula HOM05D002758 ORTHO05D002885 4.0e-08 62.0 132 43.2
Aa31LG10G2440 Aethionema arabicum HOM05D002758 ORTHO05D002885 5.2e-08 61.6 154 36.4
Thecc.09G127400 Theobroma cacao HOM05D002758 ORTHO05D002885 6.8e-08 61.2 146 37.7
TAR626G0616 Trochodendron aralioides HOM05D002758 ORTHO05D002885 6.8e-08 61.2 138 36.2
BcaB06g25687 Brassica carinata HOM05D002758 ORTHO05D002885 8.9e-08 60.8 138 44.9
BraA05t22185Z Brassica rapa HOM05D002758 ORTHO05D002885 8.9e-08 60.8 138 35.5
Dinv36518 Davidia involucrata HOM05D002758 ORTHO05D002885 8.9e-08 60.8 135 40.7
BcaC05g28933 Brassica carinata HOM05D002758 ORTHO05D002885 1.2e-07 60.5 138 35.5
A05p33610 Brassica napus HOM05D002758 ORTHO05D002885 1.2e-07 60.5 138 35.5
C05p50610 Brassica napus HOM05D002758 ORTHO05D002885 1.2e-07 60.5 138 35.5
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 1.2e-07 60.5 134 38.8
Duzib168G0478 Durio zibethinus HOM05D002758 ORTHO05D002885 2.0e-07 59.7 144 41.7
ECA234G1831 Erigeron canadensis HOM05D002758 ORTHO05D002885 2.6e-07 59.3 140 35.0
BolC5t33807H Brassica oleracea HOM05D002758 ORTHO05D002885 3.4e-07 58.9 138 34.8
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 3.4e-07 58.9 133 35.3
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 3.4e-07 58.9 124 37.9
Solyc03g116630.3 Solanum lycopersicum HOM05D002758 ORTHO05D002885 3.4e-07 58.9 139 39.6
PGSC0003DMG400000615 Solanum tuberosum HOM05D002758 ORTHO05D002885 3.4e-07 58.9 132 37.9
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 4.4e-07 58.5 130 33.8
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 7.5e-07 57.8 134 42.5
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 9.8e-07 57.4 142 33.8
Phvul.010G155100 Phaseolus vulgaris HOM05D002758 ORTHO05D002885 9.8e-07 57.4 132 31.8
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 1.3e-06 57.0 130 40.8
Glyma.04G147200 Glycine max HOM05D002758 ORTHO05D002885 1.7e-06 56.6 140 32.9
Sopen03g035550 Solanum pennellii HOM05D002758 ORTHO05D002885 1.7e-06 56.6 135 36.3
MD17G1209300 Malus domestica HOM05D002758 ORTHO05D002885 2.2e-06 56.2 135 34.8
HanXRQChr10g0315561 Helianthus annuus HOM05D002758 ORTHO05D002885 2.9e-06 55.8 134 38.8
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 3.7e-06 55.5 126 36.5
Hund09249 Selenicereus undatus HOM05D002758 ORTHO05D002885 3.7e-06 55.5 68 48.5
Duzib150G0461 Durio zibethinus HOM05D002758 ORTHO05D002885 4.9e-06 55.1 129 33.3
Potri.018G131100 Populus trichocarpa HOM05D002758 ORTHO05D002885 4.9e-06 55.1 143 33.6
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 6.4e-06 54.7 125 33.6
HanXRQChr12g0356261 Helianthus annuus HOM05D002758 ORTHO05D002885 6.4e-06 54.7 134 35.8
Psat4g039800 Pisum sativum HOM05D002758 ORTHO05D002885 8.3e-06 54.3 135 39.3


User provided reference genes

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