Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G000670 Cucumis sativus L. HOM05D006806 ORTHO05D008448 4.2e-89 331.3 159 100.0
MELO3C017969.2 Cucumis melo HOM05D006806 ORTHO05D008448 1.2e-80 303.1 153 94.8
ClCG10G010640 Citrullus lanatus HOM05D006806 ORTHO05D008448 3.1e-76 288.5 151 90.7
Haze_04900 Corylus avellana HOM05D006806 ORTHO05D008448 2.1e-40 169.5 155 54.8
Cfa005945 Carpinus fangiana HOM05D006806 ORTHO05D008448 3.6e-40 168.7 154 55.8
Gohir.D12G011300 Gossypium hirsutum HOM05D006806 ORTHO05D008448 4.7e-40 168.3 150 53.3
Thecc.01G297500 Theobroma cacao HOM05D006806 ORTHO05D008448 4.7e-40 168.3 151 54.3
GSVIVG01027979001 Vitis vinifera HOM05D006806 ORTHO05D008448 1.4e-39 166.8 145 57.9
COL.COLO4_23371 Corchorus olitorius HOM05D006806 ORTHO05D008448 1.8e-39 166.4 150 53.3
Gorai.008G011300 Gossypium raimondii HOM05D006806 ORTHO05D008448 1.8e-39 166.4 149 53.0
Duzib133G0508 Durio zibethinus HOM05D006806 ORTHO05D008448 2.3e-39 166.0 152 54.6
Atru.chr5.1178 Acer truncatum HOM05D006806 ORTHO05D008448 5.2e-39 164.9 149 55.7
Manes.05G063800 Manihot esculenta HOM05D006806 ORTHO05D008448 8.9e-39 164.1 155 53.5
MD11G1304900 Malus domestica HOM05D006806 ORTHO05D008448 3.4e-38 162.2 145 57.2
TAR365G0408 Trochodendron aralioides HOM05D006806 ORTHO05D008448 7.5e-38 161.0 155 54.2
THA.LOC104801266 Tarenaya hassleriana HOM05D006806 ORTHO05D008448 8.3e-37 157.5 150 53.3
Prupe.8G258600 Prunus persica HOM05D006806 ORTHO05D008448 1.1e-36 157.1 149 54.4
CiPaw.07G106700 Carya illinoinensis HOM05D006806 ORTHO05D008448 1.4e-36 156.8 110 64.5
Potri.014G131200 Populus trichocarpa HOM05D006806 ORTHO05D008448 1.9e-36 156.4 150 53.3
CANSAT25G0048 Cannabis sativa HOM05D006806 ORTHO05D008448 3.2e-36 155.6 150 50.0
CANSAT25G1656 Cannabis sativa HOM05D006806 ORTHO05D008448 7.1e-36 154.5 150 50.0
Sabra14G0097600 Salix brachista HOM05D006806 ORTHO05D008448 9.2e-36 154.1 156 50.0
QL12p027175 Quercus lobata HOM05D006806 ORTHO05D008448 1.2e-35 153.7 151 51.7
Solyc09g074920.3 Solanum lycopersicum HOM05D006806 ORTHO05D008448 3.5e-35 152.1 161 47.8
Sopen09g029740 Solanum pennellii HOM05D006806 ORTHO05D008448 3.5e-35 152.1 161 47.8
TWI59G0641 Tripterygium wilfordii HOM05D006806 ORTHO05D008448 3.5e-35 152.1 158 48.1
Sc05g0004190 Simmondsia chinensis HOM05D006806 ORTHO05D008448 4.6e-35 151.8 155 49.7
FvH4_2g25440 Fragaria vesca HOM05D006806 ORTHO05D008448 7.8e-35 151.0 144 54.2
Nitab4.5_0003901g0060 Nicotiana tabacum HOM05D006806 ORTHO05D008448 7.8e-35 151.0 157 47.1
Nn3g21440 Nelumbo nucifera HOM05D006806 ORTHO05D008448 1.3e-34 150.2 158 51.9
FAN24G3039 Fragaria x ananassa HOM05D006806 ORTHO05D008448 1.7e-34 149.8 147 54.4
RcHm_v2.0_Chr6g0293671 Rosa chinensis HOM05D006806 ORTHO05D008448 2.3e-34 149.4 150 54.0
CAN.G339.30 Capsicum annuum HOM05D006806 ORTHO05D008448 3.9e-34 148.7 160 46.2
FAN27G1603 Fragaria x ananassa HOM05D006806 ORTHO05D008448 3.9e-34 148.7 147 53.7
Peaxi162Scf00067g02523 Petunia axillaris HOM05D006806 ORTHO05D008448 3.9e-34 148.7 159 47.2
Sp6g02400 Schrenkiella parvula HOM05D006806 ORTHO05D008448 3.9e-34 148.7 149 52.3
FAN20G0869 Fragaria x ananassa HOM05D006806 ORTHO05D008448 8.6e-34 147.5 147 53.7
Actinidia24336 Actinidia chinensis HOM05D006806 ORTHO05D008448 1.9e-33 146.4 158 48.7
Hma1.2p1_0209F.1_g088560 Hydrangea macrophylla HOM05D006806 ORTHO05D008448 3.3e-33 145.6 159 50.3
Ciclev10021759m.g Citrus clementina HOM05D006806 ORTHO05D008448 5.6e-33 144.8 160 48.1
Nitab4.5_0000619g0080 Nicotiana tabacum HOM05D006806 ORTHO05D008448 7.3e-33 144.4 154 47.4
Cpa.g.sc9.212 Carica papaya HOM05D006806 ORTHO05D008448 9.5e-33 144.1 166 50.0
DCAR_002818 Daucus carota HOM05D006806 ORTHO05D008448 9.5e-33 144.1 151 47.7
FAN15G0699 Fragaria x ananassa HOM05D006806 ORTHO05D008448 1.6e-32 143.3 146 52.1
AL6G50560 Arabidopsis lyrata HOM05D006806 ORTHO05D008448 2.8e-32 142.5 150 50.7
CSS0020680 Camellia sinensis var. sinensis HOM05D006806 ORTHO05D008448 2.8e-32 142.5 154 49.4
Lj1C32T0 Lonicera japonica HOM05D006806 ORTHO05D008448 2.8e-32 142.5 176 44.9
Rhsim13G0012300 Rhododendron simsii HOM05D006806 ORTHO05D008448 2.8e-32 142.5 155 49.0
A09p01940 Brassica napus HOM05D006806 ORTHO05D008448 3.6e-32 142.1 152 51.3
BraA09t35844Z Brassica rapa HOM05D006806 ORTHO05D008448 3.6e-32 142.1 152 50.7
Thhalv10028943m.g Eutrema salsugineum HOM05D006806 ORTHO05D008448 3.6e-32 142.1 149 51.0
PGR119G2452 Punica granatum HOM05D006806 ORTHO05D008448 3.6e-32 142.1 162 46.3
FAN15G1766 Fragaria x ananassa HOM05D006806 ORTHO05D008448 6.2e-32 141.4 155 51.0
BcaB01g02036 Brassica carinata HOM05D006806 ORTHO05D008448 8.1e-32 141.0 153 52.3
BcaNung04058 Brassica carinata HOM05D006806 ORTHO05D008448 8.1e-32 141.0 151 51.0
BolC9t53133H Brassica oleracea HOM05D006806 ORTHO05D008448 8.1e-32 141.0 151 51.0
Aqoxy5G00723 Aquilegia oxysepala HOM05D006806 ORTHO05D008448 1.4e-31 140.2 153 49.7
AT4G02485 Arabidopsis thaliana HOM05D006806 ORTHO05D008448 1.4e-31 140.2 150 50.0
MSTRG.21623 Avicennia marina HOM05D006806 ORTHO05D008448 1.4e-31 140.2 164 45.7
Os11g0657200 Oryza sativa ssp. japonica HOM05D006806 ORTHO05D008448 2.3e-31 139.4 142 51.4
Sed0021826 Sechium edule HOM05D006806 ORTHO05D008448 3.1e-31 139.0 90 78.9
ATR0796G300 Amborella trichopoda HOM05D006806 ORTHO05D008448 5.2e-31 138.3 151 48.3
PGR119G0665 Punica granatum HOM05D006806 ORTHO05D008448 6.8e-31 137.9 156 46.8
Carub.0006s3464 Capsella rubella HOM05D006806 ORTHO05D008448 1.5e-30 136.7 150 50.0
HanXRQChr15g0465711 Helianthus annuus HOM05D006806 ORTHO05D008448 1.5e-30 136.7 158 46.2
CDE02G3512 Ceratophyllum demersum HOM05D006806 ORTHO05D008448 2.0e-30 136.3 110 57.3
SalBow3G1555 Salvia bowleyana HOM05D006806 ORTHO05D008448 5.8e-30 134.8 158 45.6
Zm00001eb115680 Zea mays HOM05D006806 ORTHO05D008448 5.8e-30 134.8 144 50.0
vmacro02466 Vaccinium macrocarpon HOM05D006806 ORTHO05D008448 7.6e-30 134.4 160 45.0
Oeu046692.2 Olea europaea HOM05D006806 ORTHO05D008448 9.9e-30 134.0 149 48.3
SEGI_33486 Sequoiadendron giganteum HOM05D006806 ORTHO05D008448 2.9e-29 132.5 152 48.7
AUR62033171 Chenopodium quinoa HOM05D006806 ORTHO05D008448 3.7e-29 132.1 150 45.3
C09p02030 Brassica napus HOM05D006806 ORTHO05D008448 6.4e-29 131.3 149 48.3
Eucgr.H01159 Eucalyptus grandis HOM05D006806 ORTHO05D008448 6.4e-29 131.3 157 46.5
Lsat_1_v5_gn_9_1100 Lactuca sativa HOM05D006806 ORTHO05D008448 1.1e-28 130.6 156 43.6
Lalb_Chr21g0312551 Lupinus albus HOM05D006806 ORTHO05D008448 4.1e-28 128.6 147 44.2
AUR62008620 Chenopodium quinoa HOM05D006806 ORTHO05D008448 2.1e-27 126.3 164 44.5
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 4.6e-27 125.2 153 45.8
Aa31LG5G2120 Aethionema arabicum HOM05D006806 ORTHO05D008448 6.6e-26 121.3 207 37.7
Migut.D00198 Erythranthe guttata HOM05D006806 ORTHO05D008448 6.6e-26 121.3 162 45.1
Hund05413 Selenicereus undatus HOM05D006806 ORTHO05D008448 6.6e-26 121.3 212 37.3
ECA247G0015 Erigeron canadensis HOM05D006806 ORTHO05D008448 8.6e-26 120.9 115 50.4
HPP92_026483 Vanilla planifolia HOM05D006806 ORTHO05D008448 1.1e-25 120.6 157 42.0
BcaNung04061 Brassica carinata HOM05D000714 ORTHO05D008448 2.5e-25 119.4 106 56.6
Lj1A1G13 Lonicera japonica HOM05D006806 ORTHO05D008448 9.6e-25 117.5 192 37.5
Mapoly0003s0075 Marchantia polymorpha HOM05D006806 ORTHO05D008448 9.6e-25 117.5 157 42.0
Phvul.008G264300 Phaseolus vulgaris HOM05D006806 ORTHO05D008448 9.6e-25 117.5 152 42.1
VMungo0647G0123 Vigna mungo HOM05D006806 ORTHO05D008448 8.1e-24 114.4 150 42.0
HPP92_014223 Vanilla planifolia HOM05D006806 ORTHO05D008448 2.4e-23 112.8 153 41.8
Medtr5g091920 Medicago truncatula HOM05D006806 ORTHO05D008448 3.1e-23 112.5 158 43.0
Glyma.14G026500 Glycine max HOM05D006806 ORTHO05D008448 5.2e-23 111.7 150 42.0
Ca_06294_v3 Cicer arietinum L. HOM05D006806 ORTHO05D008448 6.8e-23 111.3 150 44.0
EL10Ac7g17440 Beta vulgaris HOM05D006806 ORTHO05D008448 2.0e-22 109.8 203 36.9
PGSC0003DMG400011394 Solanum tuberosum HOM05D006806 ORTHO05D008448 5.8e-22 108.2 149 39.6
Pp3c19_16790 Physcomitrium patens HOM05D006806 ORTHO05D008448 1.3e-21 107.1 112 47.3
Psat2g014480 Pisum sativum HOM05D006806 ORTHO05D008448 2.9e-21 105.9 112 47.3
AagrBONN_evm.TU.Sc2ySwM_117.167 Anthoceros agrestis HOM05D006806 ORTHO05D008448 3.8e-21 105.5 147 39.5
BcaB02g10829 Brassica carinata HOM05D006806 ORTHO05D008448 9.3e-20 100.9 160 40.0
Cc01_g20670 Coffea canephora HOM05D006806 ORTHO05D008448 9.3e-20 100.9 79 57.0
SMO364G0875 Selaginella moellendorffii HOM05D006806 ORTHO05D008448 6.6e-18 94.7 143 37.8
MBI19_g29223_MAGBIO Magnolia biondii HOM05D006806 ORTHO05D008448 8.7e-18 94.4 80 56.2
LjContig00310g0013469 Lotus japonicus HOM05D006806 ORTHO05D008448 5.6e-17 91.7 155 38.7
arahy.Tifrunner.gnm1.ann1.68R93N Arachis hypogaea HOM05D006806 ORTHO05D008448 1.4e-15 87.0 112 42.0
arahy.Tifrunner.gnm1.ann1.IELT58 Arachis hypogaea HOM05D006806 ORTHO05D008448 3.1e-15 85.9 112 41.1
CARHR250790 Cardamine hirsuta HOM05D006806 ORTHO05D008448 2.6e-14 82.8 78 52.6
Gohir.A12G010900 Gossypium hirsutum HOM05D006806 ORTHO05D008448 7.6e-14 81.3 83 49.4
Dinv19713 Davidia involucrata HOM05D006806 ORTHO05D008448 1.3e-13 80.5 70 51.4
Hma1.2p1_0209F.1_g088570 Hydrangea macrophylla HOM05D006806 ORTHO05D008448 1.3e-10 70.5 66 50.0
BcaNung04059 Brassica carinata HOM05D006806 ORTHO05D008448 3.0e-10 69.3 77 49.4
Duzib116G0666 Durio zibethinus HOM05D006806 ORTHO05D008448 2.1e-08 63.2 67 43.3
Cc01_g20680 Coffea canephora HOM05D006806 ORTHO05D008448 4.8e-08 62.0 74 51.4
MBI19_g29222_MAGBIO Magnolia biondii HOM05D006806 ORTHO05D008448 6.2e-08 61.6 70 48.6


User provided reference genes

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