Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.0e-137 493.4 258 100.0
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 4.3e-75 285.4 151 96.7
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 4.2e-70 268.9 158 90.5
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 5.6e-67 258.5 151 87.4
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 4.6e-53 212.2 154 72.7
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.3e-52 210.7 153 71.9
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.8e-52 210.3 152 69.7
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.1e-51 207.6 154 71.4
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 1.9e-51 206.8 153 73.2
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 2.5e-51 206.5 152 69.7
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 4.3e-51 205.7 154 70.1
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 2.1e-50 203.4 154 70.1
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 3.7e-50 202.6 154 69.5
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.7e-50 202.6 154 69.5
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 8.2e-50 201.4 152 69.1
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-49 201.1 154 68.8
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-49 201.1 154 68.8
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.4e-49 200.7 153 71.2
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 3.1e-49 199.5 154 70.1
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 4.1e-49 199.1 155 70.3
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 4.1e-49 199.1 154 67.5
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 5.3e-49 198.7 168 66.7
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 9.0e-49 198.0 154 67.5
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 9.0e-49 198.0 157 68.2
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.2e-48 197.6 153 66.7
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 2.0e-48 196.8 159 66.7
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 2.0e-48 196.8 154 70.1
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.0e-48 196.8 148 70.9
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.0e-48 196.8 154 70.8
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 2.6e-48 196.4 152 69.7
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.6e-48 196.4 154 67.5
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.6e-48 196.4 154 67.5
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 4.5e-48 195.7 153 68.0
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 4.5e-48 195.7 154 68.2
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 5.9e-48 195.3 154 68.2
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 5.9e-48 195.3 154 68.2
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 7.6e-48 194.9 152 65.8
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 1.0e-47 194.5 150 66.0
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 1.0e-47 194.5 153 67.3
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.9e-47 193.0 151 66.2
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.9e-47 193.0 151 66.2
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 2.9e-47 193.0 154 68.2
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 6.5e-47 191.8 151 70.2
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 8.4e-47 191.4 152 67.8
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.1e-46 191.0 156 67.3
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.1e-46 191.0 151 65.6
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.4e-46 190.7 154 65.6
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.9e-46 190.3 152 63.2
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 7.2e-46 188.3 152 62.5
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 9.3e-46 188.0 154 65.6
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 9.3e-46 188.0 154 65.6
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 1.2e-45 187.6 153 66.7
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 2.1e-45 186.8 152 65.1
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 2.1e-45 186.8 153 65.4
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 2.7e-45 186.4 153 65.4
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 2.7e-45 186.4 154 64.3
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 4.6e-45 185.7 155 64.5
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 4.6e-45 185.7 152 63.2
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 4.6e-45 185.7 152 64.5
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 6.1e-45 185.3 154 65.6
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.0e-44 184.5 153 64.7
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.3e-44 184.1 152 62.5
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.3e-44 184.1 143 65.7
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.3e-44 184.1 152 65.8
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.8e-44 183.7 155 64.5
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.8e-44 183.7 152 64.5
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.3e-44 183.3 153 62.7
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 3.0e-44 183.0 154 61.7
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 3.9e-44 182.6 154 63.0
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 3.9e-44 182.6 155 63.9
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 3.9e-44 182.6 153 63.4
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 3.9e-44 182.6 156 61.5
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 5.1e-44 182.2 153 63.4
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.1e-43 181.0 204 52.9
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 1.5e-43 180.6 155 62.6
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.5e-43 179.9 179 57.5
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 3.3e-43 179.5 153 62.1
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 4.3e-43 179.1 143 66.4
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 4.3e-43 179.1 154 64.3
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 4.3e-43 179.1 153 62.1
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 5.7e-43 178.7 152 63.8
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 9.7e-43 177.9 153 62.1
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 1.3e-42 177.6 153 63.4
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.6e-42 177.2 152 61.2
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.6e-42 177.2 153 61.4
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 2.2e-42 176.8 179 57.0
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 2.2e-42 176.8 152 62.5
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 3.7e-42 176.0 154 62.3
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 3.7e-42 176.0 191 55.0
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 3.7e-42 176.0 154 62.3
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 3.7e-42 176.0 152 61.8
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 6.3e-42 175.3 153 60.8
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 6.3e-42 175.3 143 64.3
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 6.3e-42 175.3 143 64.3
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 8.2e-42 174.9 151 60.3
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 8.2e-42 174.9 145 63.4
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.1e-41 174.5 156 62.8
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 2.4e-41 173.3 156 62.2
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 3.1e-41 172.9 144 66.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 3.1e-41 172.9 155 58.1
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 4.1e-41 172.6 154 61.0
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 2.2e-39 166.8 154 58.4
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 1.1e-38 164.5 189 55.0
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 2.5e-38 163.3 155 60.0
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 2.3e-36 156.8 145 60.0
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 3.0e-36 156.4 139 60.4
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 5.1e-36 155.6 110 73.6
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 5.7e-35 152.1 150 56.0
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 4.8e-34 149.1 126 66.7
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 5.3e-33 145.6 144 54.9
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 9.1e-33 144.8 153 56.2
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 3.4e-32 142.9 148 53.4
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 3.8e-31 139.4 152 53.3
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.1e-30 137.9 108 68.5
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 1.1e-30 137.9 140 59.3
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 1.4e-30 137.5 119 63.0
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 2.5e-30 136.7 154 54.5
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 3.2e-30 136.3 113 65.5
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 5.5e-30 135.6 152 52.6
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.5e-27 127.5 151 51.0
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.3e-26 124.4 145 52.4
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.8e-25 120.6 156 44.2
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.6e-24 117.5 119 55.5
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 4.5e-24 115.9 152 46.7
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 2.5e-22 110.2 154 44.2
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 5.5e-22 109.0 149 45.0
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.6e-21 106.3 87 63.2
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 4.7e-21 105.9 101 57.4
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 4.4e-19 99.4 94 61.7
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 5.7e-19 99.0 78 70.5
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 9.7e-19 98.2 140 45.7
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.7e-18 97.4 163 39.9
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 4.5e-16 89.4 199 40.2
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 6.5e-15 85.5 76 64.5
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 1.5e-14 84.3 146 39.0
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.5e-14 84.3 97 52.6
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 5.5e-14 82.4 87 47.1
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.6e-13 79.7 81 56.8
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 3.6e-13 79.7 79 59.5
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 2.3e-12 77.0 94 48.9
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 6.8e-12 75.5 79 58.2
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 8.8e-12 75.1 75 60.0
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-11 73.6 70 50.0
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 4.8e-10 69.3 50 70.0
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 2.0e-08 63.9 146 32.2
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 1.3e-07 61.2 84 47.6
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.2e-07 60.5 73 46.6
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 3.2e-06 56.6 130 34.6
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 4.2e-06 56.2 74 43.2


User provided reference genes

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