Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 1.9e-223 778.9 392 100.0
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.2e-206 723.0 392 92.1
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 3.8e-184 648.3 392 84.9
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 1.1e-159 567.0 388 75.0
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 9.6e-127 457.6 381 59.1
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 9.6e-127 457.6 386 59.6
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 1.3e-126 457.2 379 59.9
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 1.6e-126 456.8 387 59.9
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.8e-125 453.4 383 59.8
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.2e-124 450.7 384 60.9
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.0e-124 449.9 379 61.5
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 5.8e-124 448.4 382 58.9
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 9.9e-124 447.6 383 59.3
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.3e-123 447.2 378 60.6
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.7e-123 446.8 377 60.7
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 2.2e-123 446.4 378 59.0
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 3.8e-123 445.7 373 60.1
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 6.4e-123 444.9 376 61.4
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.1e-122 444.1 383 58.7
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 2.4e-122 443.0 383 59.8
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 5.5e-122 441.8 382 57.6
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 5.5e-122 441.8 378 58.5
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 7.1e-122 441.4 375 57.3
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 7.1e-122 441.4 375 57.3
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 7.1e-122 441.4 375 60.5
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 9.3e-122 441.0 382 58.4
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 1.2e-121 440.7 382 57.9
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 2.7e-121 439.5 382 57.3
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 2.7e-121 439.5 379 58.0
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 4.6e-121 438.7 385 57.4
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 6.0e-121 438.3 375 56.5
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 6.0e-121 438.3 380 58.9
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 3.0e-120 436.0 384 59.1
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 5.1e-120 435.3 383 57.7
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 6.7e-120 434.9 381 57.5
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 8.7e-120 434.5 373 59.2
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.5e-119 433.0 382 57.3
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.3e-119 432.2 381 57.7
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 5.6e-119 431.8 383 58.0
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.6e-119 431.8 382 56.5
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.6e-119 431.8 382 57.9
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.1e-118 429.9 381 58.0
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 3.7e-118 429.1 380 57.1
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.8e-117 426.8 381 57.2
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.8e-117 426.8 383 56.4
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.4e-117 426.4 381 57.2
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 5.3e-117 425.2 381 57.5
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.5e-116 423.7 381 57.2
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 3.8e-115 419.1 375 57.1
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.1e-114 417.5 384 54.9
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.4e-114 417.2 375 56.0
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.4e-114 417.2 381 56.4
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 3.2e-114 416.0 386 55.2
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 4.2e-114 415.6 381 56.4
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.5e-114 415.2 381 56.4
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 9.6e-111 404.4 383 52.5
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.6e-110 403.7 381 53.8
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.6e-110 403.7 386 53.4
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.6e-110 403.7 370 54.9
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 2.8e-110 402.9 380 53.2
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.7e-110 402.5 386 52.8
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 8.2e-110 401.4 382 53.1
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 1.4e-109 400.6 375 54.4
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 2.4e-109 399.8 378 54.8
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 4.1e-109 399.1 385 54.0
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 6.9e-109 398.3 382 55.2
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 1.2e-108 397.5 382 50.8
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.5e-108 397.1 382 51.0
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.4e-108 396.0 385 51.2
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 7.6e-108 394.8 385 52.7
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.0e-107 394.4 385 53.0
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 1.7e-107 393.7 382 52.4
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.7e-107 393.7 385 51.2
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 5.0e-107 392.1 384 53.1
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 8.5e-107 391.3 390 51.0
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.9e-106 390.2 379 55.4
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 5.5e-106 388.7 380 50.0
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 5.5e-106 388.7 385 52.5
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 5.5e-106 388.7 381 53.5
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 6.1e-105 385.2 385 50.9
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 3.9e-104 382.5 382 50.5
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 8.7e-104 381.3 429 47.1
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 3.3e-103 379.4 381 51.4
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 4.3e-103 379.0 384 50.3
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 2.2e-102 376.7 381 52.2
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 1.2e-100 370.9 384 48.4
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.5e-100 370.5 389 49.9
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.5e-100 370.5 365 52.9
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.7e-99 367.1 382 49.7
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 2.9e-99 366.3 381 49.6
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 6.5e-99 365.2 384 49.0
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.4e-98 364.0 379 49.3
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 4.2e-98 362.5 385 50.1
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 7.2e-98 361.7 375 51.2
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.6e-97 360.5 378 49.5
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.6e-97 360.5 380 48.7
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-97 360.1 375 51.7
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 4.6e-97 359.0 289 60.2
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 6.1e-97 358.6 378 49.5
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 6.1e-97 358.6 384 49.2
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 7.9e-97 358.2 379 49.6
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.9e-96 355.9 380 47.9
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 6.7e-96 355.1 381 50.9
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 1.5e-95 354.0 289 60.2
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 6.3e-94 348.6 378 49.7
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.4e-93 346.7 376 48.9
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 9.1e-93 344.7 289 60.2
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.3e-91 340.9 372 46.2
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.2e-89 334.3 372 49.7
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.4e-88 330.9 416 44.5
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 5.2e-88 328.9 328 52.7
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 9.7e-87 324.7 268 59.3
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 2.2e-86 323.6 374 49.2
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 7.0e-85 318.5 381 46.5
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 9.1e-85 318.2 377 48.3
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.0e-84 317.0 375 47.2
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 1.8e-80 303.9 331 47.4
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.8e-80 303.9 375 44.8
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 3.1e-77 293.1 378 42.6
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 4.8e-70 269.2 418 40.2
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.1e-69 265.0 312 46.5
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 4.5e-68 262.7 259 54.4
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 7.7e-68 261.9 381 39.6
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.3e-67 261.2 294 46.6
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 3.2e-66 256.5 385 41.0
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 8.8e-64 248.4 389 38.3
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 9.8e-63 245.0 355 38.9
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 2.4e-61 240.4 382 39.5
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 7.0e-61 238.8 246 54.1
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 7.8e-60 235.3 185 65.4
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.1e-58 231.5 373 38.6
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 1.2e-57 228.0 164 64.6
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.8e-57 226.9 385 37.9
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 3.0e-56 223.4 185 61.6
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 1.7e-51 207.6 422 33.2
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 3.0e-51 206.8 417 32.6
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 1.5e-50 204.5 383 34.7
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 5.2e-48 196.1 416 32.2
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 6.8e-48 195.7 173 57.2
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.3e-46 191.4 264 42.4
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.3e-43 181.4 284 38.7
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 3.0e-43 180.3 544 27.6
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.2e-41 174.9 371 32.9
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.4e-40 171.4 363 34.2
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 1.7e-38 164.5 257 38.5
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 8.3e-38 162.2 392 31.1
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.0e-35 155.2 396 30.8
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 1.3e-35 154.8 312 34.9
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 8.1e-33 145.6 357 30.3
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 6.8e-32 142.5 199 42.2
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 2.4e-29 134.0 127 51.2
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 5.4e-29 132.9 123 56.1
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.7e-28 130.6 99 60.6
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 3.0e-27 127.1 94 61.7
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.9e-26 124.4 113 54.0
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.0e-23 114.4 124 50.8
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.7e-22 111.3 87 58.6
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 6.4e-22 109.4 371 25.9
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 1.9e-21 107.8 181 34.3
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 3.5e-20 103.6 86 58.1
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 2.1e-17 94.4 117 38.5
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 1.5e-15 88.2 144 36.1
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 7.6e-15 85.9 82 56.1
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 4.6e-12 76.6 146 37.0
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 7.9e-12 75.9 76 48.7
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.8e-11 74.7 172 27.3
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-11 74.7 75 48.0
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.6e-10 68.9 72 47.2
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 5.8e-07 59.7 73 34.2
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 6.4e-06 56.2 37 70.3


User provided reference genes

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