Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 6.9e-73 277.3 153 100.0
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 1.8e-60 236.1 153 85.6
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 2.4e-57 225.7 151 81.5
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 1.9e-54 216.1 152 77.6
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 8.3e-50 200.7 124 87.1
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 5.5e-46 188.0 142 71.8
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 1.2e-45 186.8 148 68.9
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 1.6e-45 186.4 148 68.9
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 3.6e-45 185.3 147 68.7
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 4.7e-45 184.9 141 70.2
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 1.0e-44 183.7 148 67.6
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 1.4e-44 183.3 147 70.1
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 2.3e-44 182.6 147 68.0
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 2.3e-44 182.6 142 69.0
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 4.0e-44 181.8 140 70.0
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 6.8e-44 181.0 147 66.7
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 8.8e-44 180.6 138 68.1
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 8.8e-44 180.6 123 78.0
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 1.2e-43 180.3 147 67.3
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 1.5e-43 179.9 150 67.3
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 2.0e-43 179.5 141 68.1
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 2.6e-43 179.1 129 71.3
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 4.4e-43 178.3 150 64.7
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 4.4e-43 178.3 150 64.7
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 5.7e-43 177.9 151 65.6
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 5.7e-43 177.9 152 64.5
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 7.5e-43 177.6 150 64.0
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 9.8e-43 177.2 151 62.9
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 1.3e-42 176.8 126 72.2
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 3.7e-42 175.3 152 64.5
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 4.9e-42 174.9 129 69.8
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 8.3e-42 174.1 152 65.1
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 1.1e-41 173.7 127 70.9
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 1.1e-41 173.7 147 65.3
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 1.1e-41 173.7 152 64.5
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 1.4e-41 173.3 129 71.3
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 1.8e-41 172.9 142 64.8
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 1.8e-41 172.9 160 61.9
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 4.1e-41 171.8 140 65.7
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 5.4e-41 171.4 141 66.0
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 9.2e-41 170.6 140 65.0
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 9.2e-41 170.6 142 64.8
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 3.5e-40 168.7 140 63.6
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 1.0e-39 167.2 154 63.0
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 2.3e-39 166.0 151 62.9
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 2.3e-39 166.0 140 64.3
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 2.9e-39 165.6 213 50.7
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.9e-39 165.6 154 62.3
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.9e-39 165.6 154 62.3
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 2.9e-39 165.6 151 59.6
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 2.9e-39 165.6 131 66.4
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 6.6e-39 164.5 151 58.3
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 6.6e-39 164.5 145 62.1
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 8.6e-39 164.1 140 62.1
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 1.1e-38 163.7 148 60.8
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 1.1e-38 163.7 147 63.3
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 1.1e-38 163.7 143 63.6
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 1.5e-38 163.3 151 58.3
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 2.5e-38 162.5 138 63.0
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 4.3e-38 161.8 151 57.0
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 9.5e-38 160.6 131 64.9
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 2.1e-37 159.5 141 63.1
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 2.8e-37 159.1 138 64.5
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 2.8e-37 159.1 124 66.9
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 2.8e-37 159.1 126 65.9
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 3.6e-37 158.7 121 69.4
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 4.7e-37 158.3 152 57.9
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 4.7e-37 158.3 134 64.2
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 8.0e-37 157.5 131 64.9
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 1.0e-36 157.1 146 60.3
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 1.0e-36 157.1 123 67.5
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 2.3e-36 156.0 126 64.3
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 5.2e-36 154.8 111 71.2
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 6.8e-36 154.5 141 60.3
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 6.8e-36 154.5 142 59.2
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 8.9e-36 154.1 141 61.0
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.5e-35 153.3 176 54.5
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 1.3e-34 150.2 147 53.7
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 1.3e-34 150.2 141 58.2
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 1.3e-34 150.2 141 58.2
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 1.3e-34 150.2 152 53.3
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.2e-34 149.4 185 51.9
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 2.2e-34 149.4 113 68.1
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 2.9e-34 149.1 124 61.3
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 3.7e-34 148.7 151 54.3
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 4.9e-34 148.3 137 55.5
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 4.9e-34 148.3 154 54.5
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 6.4e-34 147.9 137 55.5
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 6.4e-34 147.9 137 54.7
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 6.4e-34 147.9 137 55.5
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 6.4e-34 147.9 148 52.7
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 8.3e-34 147.5 149 55.0
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 8.3e-34 147.5 126 61.9
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 1.1e-33 147.1 137 55.5
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 2.4e-33 146.0 124 62.9
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 3.2e-33 145.6 136 55.1
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 4.1e-33 145.2 123 63.4
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 5.4e-33 144.8 153 51.6
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 7.0e-33 144.4 160 51.9
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 7.0e-33 144.4 128 60.2
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 9.2e-33 144.1 148 52.7
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.6e-32 143.3 134 60.4
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 4.6e-32 141.7 127 55.9
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 1.7e-31 139.8 141 54.6
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 3.0e-31 139.0 124 59.7
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 1.5e-30 136.7 160 50.6
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 1.9e-30 136.3 151 51.7
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 5.6e-30 134.8 151 49.7
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 1.6e-29 133.3 137 56.2
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 2.3e-28 129.4 127 52.8
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 5.2e-28 128.3 309 34.0
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 6.8e-28 127.9 160 48.1
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 2.0e-27 126.3 113 60.2
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 6.4e-26 121.3 110 60.9
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 7.0e-25 117.9 107 57.0
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 5.6e-22 108.2 150 49.3
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 1.1e-20 104.0 153 43.8
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 1.2e-19 100.5 72 70.8
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 1.9e-17 93.2 68 70.6
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 5.4e-17 91.7 105 49.5
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 2.8e-13 79.3 134 42.5
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 8.1e-13 77.8 134 41.8
Nitab4.5_0000500g0150 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.1e-12 77.4 101 48.5
Oeu017208.1 Olea europaea HOM05D002196 ORTHO05D002565 1.1e-09 67.4 75 54.7
MBI15_g37973_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.4e-09 67.0 46 71.7


User provided reference genes

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