Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 1.5e-46 189.1 95 100.0
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 1.3e-24 116.3 61 93.4
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 2.9e-21 105.1 62 88.7
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 8.0e-19 97.1 54 87.0
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 1.8e-18 95.9 62 82.3
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 8.8e-18 93.6 61 75.4
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.0e-17 92.4 61 75.4
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 2.0e-17 92.4 61 77.0
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 7.5e-17 90.5 57 78.9
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 1.7e-16 89.4 58 75.9
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 2.2e-16 89.0 61 73.8
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 2.8e-16 88.6 61 73.8
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 3.7e-16 88.2 62 74.2
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 4.8e-16 87.8 54 79.6
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 6.3e-16 87.4 61 73.8
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 8.3e-16 87.0 61 72.1
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 1.1e-15 86.7 61 70.5
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 1.1e-15 86.7 59 76.3
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.4e-15 86.3 54 75.9
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.4e-15 86.3 57 71.9
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 1.8e-15 85.9 61 73.8
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.4e-15 85.5 61 72.1
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 4.1e-15 84.7 61 72.1
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 4.1e-15 84.7 61 68.9
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 7.0e-15 84.0 61 72.1
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 9.1e-15 83.6 61 73.8
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 9.1e-15 83.6 61 67.2
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 1.2e-14 83.2 49 81.6
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 1.6e-14 82.8 62 69.4
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.6e-14 82.8 61 70.5
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 2.7e-14 82.0 61 70.5
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 4.5e-14 81.3 45 82.2
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 5.9e-14 80.9 58 72.4
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 5.9e-14 80.9 58 72.4
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 5.9e-14 80.9 58 72.4
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 5.9e-14 80.9 61 68.9
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 5.9e-14 80.9 62 69.4
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 5.9e-14 80.9 48 79.2
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 7.7e-14 80.5 61 67.2
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 7.7e-14 80.5 61 67.2
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 7.7e-14 80.5 58 67.2
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.0e-13 80.1 61 67.2
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 1.0e-13 80.1 49 73.5
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 1.3e-13 79.7 61 67.2
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.3e-13 79.7 61 67.2
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 1.3e-13 79.7 61 67.2
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 1.3e-13 79.7 73 63.0
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 1.7e-13 79.3 62 66.1
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 2.3e-13 79.0 61 67.2
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 2.3e-13 79.0 61 67.2
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 2.9e-13 78.6 60 66.7
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 2.9e-13 78.6 55 72.7
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 2.9e-13 78.6 55 72.7
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 2.9e-13 78.6 47 76.6
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 3.8e-13 78.2 54 72.2
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.8e-13 78.2 62 64.5
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 3.8e-13 78.2 63 61.9
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 3.8e-13 78.2 63 61.9
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 3.8e-13 78.2 62 67.7
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 3.8e-13 78.2 61 63.9
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 5.0e-13 77.8 61 68.9
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 5.0e-13 77.8 61 68.9
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 5.0e-13 77.8 61 65.6
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 5.0e-13 77.8 58 67.2
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 6.5e-13 77.4 47 74.5
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 6.5e-13 77.4 60 65.0
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 8.6e-13 77.0 52 73.1
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 8.6e-13 77.0 46 73.9
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 1.1e-12 76.6 41 87.8
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 1.1e-12 76.6 57 61.4
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.9e-12 75.9 61 63.9
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 1.9e-12 75.9 60 61.7
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 1.9e-12 75.9 49 71.4
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 2.5e-12 75.5 57 68.4
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 2.5e-12 75.5 57 68.4
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 2.5e-12 75.5 61 63.9
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 2.5e-12 75.5 80 52.5
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 5.5e-12 74.3 61 65.6
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 1.6e-11 72.8 47 70.2
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 8.0e-11 70.5 56 60.7
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.4e-10 69.7 63 60.3
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 7.5e-09 63.9 93 43.0
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 9.8e-09 63.5 36 77.8
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 1.7e-08 62.8 58 58.6
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 8.3e-08 60.5 37 75.7
MELO3C030355.2 Cucumis melo HOM05D007758 ORTHO05D009788 1.4e-07 59.7 32 90.6
Pp3c7_6680 Physcomitrium patens HOM05D052415 ORTHO05D048764 2.0e-06 55.8 46 54.3
SHI07594 Sapria himalayana HOM05D007758 ORTHO05D009788 2.7e-06 55.5 65 50.8
TWI81G0786 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 4.5e-06 54.7 35 68.6


User provided reference genes

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