Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G016980 Cucumis sativus L. HOM05D002067 ORTHO05D172773 4.5e-22 107.1 55 100.0
CsaV3_3G049450 Cucumis sativus L. HOM05D002067 ORTHO05D173780 4.5e-22 107.1 55 100.0
ClCG09G012280 Citrullus lanatus HOM05D002067 ORTHO05D002244 1.1e-20 102.4 55 94.5
MELO3C003379.2 Cucumis melo HOM05D002067 ORTHO05D002244 1.1e-20 102.4 55 96.4
Sed0020285 Sechium edule HOM05D002067 ORTHO05D002244 6.0e-19 96.7 55 87.3
QL12p006857 Quercus lobata HOM05D002067 ORTHO05D002244 2.0e-14 81.6 55 72.7
Sed0005770 Sechium edule HOM05D002067 ORTHO05D002244 3.4e-14 80.9 55 76.4
Cfa012395 Carpinus fangiana HOM05D002067 ORTHO05D002244 1.3e-13 79.0 55 69.1
Haze_08289 Corylus avellana HOM05D002067 ORTHO05D002244 1.3e-13 79.0 55 69.1
Prupe.5G043200 Prunus persica HOM05D002067 ORTHO05D002244 2.2e-13 78.2 55 70.9
MD06G1028600 Malus domestica HOM05D002067 ORTHO05D002244 3.8e-13 77.4 55 70.9
AT2G35390 Arabidopsis thaliana HOM05D002067 ORTHO05D002244 6.5e-13 76.6 55 70.9
Carub.0004s1708 Capsella rubella HOM05D002067 ORTHO05D002244 1.1e-12 75.9 55 70.9
CiPaw.12G061100 Carya illinoinensis HOM05D002067 ORTHO05D002244 1.1e-12 75.9 55 65.5
Thecc.03G233000 Theobroma cacao HOM05D002067 ORTHO05D002244 2.5e-12 74.7 55 67.3
AL4G31440 Arabidopsis lyrata HOM05D002067 ORTHO05D002244 3.2e-12 74.3 55 70.9
Duzib084G0735 Durio zibethinus HOM05D002067 ORTHO05D002244 4.2e-12 73.9 55 65.5
Sp4g17620 Schrenkiella parvula HOM05D002067 ORTHO05D002244 4.2e-12 73.9 55 67.3
Thhalv10016745m.g Eutrema salsugineum HOM05D002067 ORTHO05D002244 5.5e-12 73.6 55 67.3
VMungo0251G3564 Vigna mungo HOM05D002067 ORTHO05D002244 7.1e-12 73.2 55 67.3
Atru.chr6.1765 Acer truncatum HOM05D002067 ORTHO05D002244 9.3e-12 72.8 55 67.3
Potri.003G088400 Populus trichocarpa HOM05D002067 ORTHO05D002244 9.3e-12 72.8 55 65.5
Glyma.05G070500 Glycine max HOM05D002067 ORTHO05D002244 1.2e-11 72.4 55 67.3
Phvul.003G228800 Phaseolus vulgaris HOM05D002067 ORTHO05D002244 1.2e-11 72.4 55 67.3
Aa31LG9G15410 Aethionema arabicum HOM05D002067 ORTHO05D002244 1.6e-11 72.0 48 72.9
Duzib068G0350 Durio zibethinus HOM05D002067 ORTHO05D002244 2.1e-11 71.6 55 63.6
Glyma.17G153200 Glycine max HOM05D002067 ORTHO05D002244 2.1e-11 71.6 55 67.3
Gohir.D12G212600 Gossypium hirsutum HOM05D002067 ORTHO05D002244 2.1e-11 71.6 47 74.5
Gorai.008G228200 Gossypium raimondii HOM05D002067 ORTHO05D002244 2.1e-11 71.6 47 74.5
RcHm_v2.0_Chr7g0208781 Rosa chinensis HOM05D002067 ORTHO05D002244 2.7e-11 71.2 47 76.6
CARHR129550 Cardamine hirsuta HOM05D002067 ORTHO05D002244 3.5e-11 70.9 56 67.9
Gohir.A12G209900 Gossypium hirsutum HOM05D002067 ORTHO05D002244 3.5e-11 70.9 47 74.5
TWI60G0415 Tripterygium wilfordii HOM05D002067 ORTHO05D002244 3.5e-11 70.9 56 67.9
ClCG10G001860 Citrullus lanatus HOM05D002067 ORTHO05D002244 4.6e-11 70.5 55 65.5
Ciclev10031694m.g Citrus clementina HOM05D002067 ORTHO05D002244 4.6e-11 70.5 56 64.3
TWI81G0705 Tripterygium wilfordii HOM05D002067 ORTHO05D002244 4.6e-11 70.5 56 67.9
Cpa.g.sc6.432 Carica papaya HOM05D002067 ORTHO05D002244 6.1e-11 70.1 55 67.3
COL.COLO4_17100 Corchorus olitorius HOM05D002067 ORTHO05D002244 6.1e-11 70.1 55 61.8
FvH4_5g21390 Fragaria vesca HOM05D002067 ORTHO05D002244 6.1e-11 70.1 55 67.3
FAN18G3507 Fragaria x ananassa HOM05D002067 ORTHO05D002244 6.1e-11 70.1 55 67.3
AUR62018760 Chenopodium quinoa HOM05D002067 ORTHO05D002244 7.9e-11 69.7 54 63.0
Lj4g0028247 Lotus japonicus HOM05D002067 ORTHO05D002244 7.9e-11 69.7 55 61.8
Potri.001G145700 Populus trichocarpa HOM05D002067 ORTHO05D002244 7.9e-11 69.7 55 63.6
EL10Ac5g12179 Beta vulgaris HOM05D002067 ORTHO05D002244 1.3e-10 68.9 53 62.3
BcaB02g09433 Brassica carinata HOM05D002067 ORTHO05D002244 1.8e-10 68.6 49 75.5
Duzib205G1626 Durio zibethinus HOM05D002067 ORTHO05D002244 2.3e-10 68.2 53 64.2
GSVIVG01013241001 Vitis vinifera HOM05D002067 ORTHO05D002244 2.3e-10 68.2 55 58.2
Sabra03G0058400 Salix brachista HOM05D002067 ORTHO05D002244 3.0e-10 67.8 55 58.2
THA.LOC104812752 Tarenaya hassleriana HOM05D002067 ORTHO05D002244 3.0e-10 67.8 55 61.8
A05p10330 Brassica napus HOM05D002067 ORTHO05D002244 3.9e-10 67.4 49 73.5
BraA05t19971Z Brassica rapa HOM05D002067 ORTHO05D002244 3.9e-10 67.4 49 73.5
FAN04G0437 Fragaria x ananassa HOM05D002067 ORTHO05D002244 3.9e-10 67.4 55 63.6
FAN13G3302 Fragaria x ananassa HOM05D002067 ORTHO05D002244 3.9e-10 67.4 55 63.6
FAN08G1253 Fragaria x ananassa HOM05D002067 ORTHO05D002244 5.1e-10 67.0 55 65.5
BcaC02g11646 Brassica carinata HOM05D002067 ORTHO05D002244 8.7e-10 66.2 49 71.4
C04p12770 Brassica napus HOM05D002067 ORTHO05D002244 8.7e-10 66.2 49 71.4
BolC4t22923H Brassica oleracea HOM05D002067 ORTHO05D002244 8.7e-10 66.2 49 71.4
CsaV3_3G002000 Cucumis sativus L. HOM05D002067 ORTHO05D002244 8.7e-10 66.2 55 60.0
Ca_22056_v3 Cicer arietinum L. HOM05D002067 ORTHO05D002244 1.1e-09 65.9 55 58.2
Lalb_Chr16g0386111 Lupinus albus HOM05D002067 ORTHO05D002244 1.1e-09 65.9 48 66.7
Ah.12g054520 Amaranthus hybridus HOM05D002067 ORTHO05D002244 1.5e-09 65.5 48 64.6
CANSAT21G0161 Cannabis sativa HOM05D002067 ORTHO05D002244 1.9e-09 65.1 55 60.0
Hma1.2p1_0414F.1_g147860 Hydrangea macrophylla HOM05D002067 ORTHO05D002244 1.9e-09 65.1 55 58.2
Sc22g0001430 Simmondsia chinensis HOM05D002067 ORTHO05D002244 1.9e-09 65.1 48 64.6
Dinv25191 Davidia involucrata HOM05D002067 ORTHO05D002244 4.3e-09 63.9 48 62.5
Gohir.D08G179400 Gossypium hirsutum HOM05D002067 ORTHO05D002244 5.7e-09 63.5 55 54.5
Lj2A244G65 Lonicera japonica HOM05D002067 ORTHO05D002244 9.7e-09 62.8 48 62.5
Lalb_Chr05g0220621 Lupinus albus HOM05D002067 ORTHO05D002244 9.7e-09 62.8 55 56.4
Hund14423 Selenicereus undatus HOM05D002067 ORTHO05D002244 9.7e-09 62.8 54 57.4
Aa31LG2G13620 Aethionema arabicum HOM05D002067 ORTHO05D002244 1.3e-08 62.4 55 54.5
Gorai.004G187900 Gossypium raimondii HOM05D002067 ORTHO05D002244 1.3e-08 62.4 55 52.7
Nitab4.5_0000764g0040 Nicotiana tabacum HOM05D002067 ORTHO05D002244 1.3e-08 62.4 48 58.3
TAR374G0221 Trochodendron aralioides HOM05D002067 ORTHO05D002244 1.3e-08 62.4 55 52.7
vmacro14154 Vaccinium macrocarpon HOM05D002067 ORTHO05D002244 1.6e-08 62.0 48 62.5
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 2.2e-08 61.6 48 60.4
Peaxi162Scf00312g00610 Petunia axillaris HOM05D002067 ORTHO05D002244 2.2e-08 61.6 48 56.2
Sed0014389 Sechium edule HOM05D002067 ORTHO05D002244 2.2e-08 61.6 55 56.4
Solyc08g077200.4 Solanum lycopersicum HOM05D002067 ORTHO05D002244 2.2e-08 61.6 48 56.2
Sopen08g025760 Solanum pennellii HOM05D002067 ORTHO05D002244 2.2e-08 61.6 48 56.2
PGSC0003DMG400024226 Solanum tuberosum HOM05D002067 ORTHO05D002244 2.2e-08 61.6 48 56.2
Gohir.A08G159000 Gossypium hirsutum HOM05D002067 ORTHO05D002244 3.7e-08 60.8 55 52.7
Medtr4g098820 Medicago truncatula HOM05D002067 ORTHO05D002244 3.7e-08 60.8 55 56.4
TPR.G19200 Trifolium pratense HOM05D002067 ORTHO05D002244 3.7e-08 60.8 48 58.3
Cc08_g02300 Coffea canephora HOM05D002067 ORTHO05D002244 4.8e-08 60.5 53 50.9
Oeu005305.1 Olea europaea HOM05D002067 ORTHO05D002244 4.8e-08 60.5 49 61.2
Thhalv10007797m.g Eutrema salsugineum HOM05D002067 ORTHO05D002244 6.3e-08 60.1 47 59.6
Nitab4.5_0000545g0050 Nicotiana tabacum HOM05D002067 ORTHO05D002244 1.1e-07 59.3 48 56.2
Psat4g078360 Pisum sativum HOM05D002067 ORTHO05D002244 1.8e-07 58.5 55 54.5
TAR371G0893 Trochodendron aralioides HOM05D002067 ORTHO05D002244 1.8e-07 58.5 53 52.8
TAR629G2578 Trochodendron aralioides HOM05D002067 ORTHO05D002244 1.8e-07 58.5 53 52.8
AL1G46580 Arabidopsis lyrata HOM05D002067 ORTHO05D002244 2.4e-07 58.2 48 56.2
MSTRG.1976 Avicennia marina HOM05D002067 ORTHO05D002244 2.4e-07 58.2 55 49.1
BcaB07g32922 Brassica carinata HOM05D002067 ORTHO05D002244 2.4e-07 58.2 49 55.1
CAN.G799.6 Capsicum annuum HOM05D002067 ORTHO05D002244 2.4e-07 58.2 48 54.2
Aqoxy3G02481 Aquilegia oxysepala HOM05D002067 ORTHO05D002244 3.1e-07 57.8 53 54.7
AT1G32380 Arabidopsis thaliana HOM05D002067 ORTHO05D002244 3.1e-07 57.8 48 54.2
Migut.E00920 Erythranthe guttata HOM05D002067 ORTHO05D002244 3.1e-07 57.8 49 55.1
GSVIVG01018382001 Vitis vinifera HOM05D002067 ORTHO05D002244 4.1e-07 57.4 53 50.9
BcaC05g27276 Brassica carinata HOM05D002067 ORTHO05D002244 5.3e-07 57.0 49 53.1
C05p31840 Brassica napus HOM05D002067 ORTHO05D002244 5.3e-07 57.0 49 53.1
BolC5t31912H Brassica oleracea HOM05D002067 ORTHO05D002244 5.3e-07 57.0 49 53.1
CSS0018980 Camellia sinensis var. sinensis HOM05D002067 ORTHO05D002244 5.3e-07 57.0 48 58.3
CSS0032095 Camellia sinensis var. sinensis HOM05D002067 ORTHO05D002244 5.3e-07 57.0 48 58.3
AUR62018630 Chenopodium quinoa HOM05D002067 ORTHO05D002244 5.3e-07 57.0 56 53.6
unitig_8.g3916 Utricularia gibba HOM05D002067 ORTHO05D001060 5.3e-07 57.0 54 50.0
arahy.Tifrunner.gnm1.ann1.3599G4 Arachis hypogaea HOM05D002067 ORTHO05D002244 6.9e-07 56.6 55 52.7
arahy.Tifrunner.gnm1.ann1.E8TFP6 Arachis hypogaea HOM05D002067 ORTHO05D002244 6.9e-07 56.6 55 52.7
Sp1g28500 Schrenkiella parvula HOM05D002067 ORTHO05D002244 6.9e-07 56.6 55 47.3
A09p33780 Brassica napus HOM05D002067 ORTHO05D002244 1.2e-06 55.8 49 51.0
BraA09t38928Z Brassica rapa HOM05D002067 ORTHO05D002244 1.2e-06 55.8 49 51.0
Rhsim07G0123400 Rhododendron simsii HOM05D002067 ORTHO05D002244 1.2e-06 55.8 48 56.2
Carub.0001s3078 Capsella rubella HOM05D002067 ORTHO05D002244 2.0e-06 55.1 48 52.1
Nn6g33645 Nelumbo nucifera HOM05D002067 ORTHO05D002244 3.4e-06 54.3 53 50.9
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 4.5e-06 53.9 55 58.2
Nitab4.5_0004658g0040 Nicotiana tabacum HOM05D002067 ORTHO05D002244 4.5e-06 53.9 48 52.1
Eucgr.E01722 Eucalyptus grandis HOM05D002067 ORTHO05D002244 1.0e-05 52.8 54 48.1


User provided reference genes

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