Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.6e-263 911.0 443 100.0
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.2e-236 822.0 443 89.6
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 6.4e-196 687.6 442 75.6
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.9e-190 667.5 439 74.0
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.2e-188 662.5 442 74.7
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.2e-187 658.3 440 73.9
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 2.1e-186 656.0 442 71.7
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.9e-181 637.9 437 68.4
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 8.2e-175 617.5 441 66.7
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.0e-172 610.5 437 66.6
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 2.0e-168 596.3 436 64.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 4.1e-166 588.6 434 64.1
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 4.5e-165 585.1 440 62.5
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 5.9e-165 584.7 434 63.6
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 7.7e-165 584.3 441 63.3
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.7e-164 583.2 436 62.8
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.2e-164 582.8 440 62.5
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 2.2e-164 582.8 437 63.8
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.9e-164 582.4 443 62.1
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 3.8e-164 582.0 443 62.3
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 8.5e-164 580.9 440 61.8
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 8.5e-164 580.9 441 62.8
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.1e-163 580.5 443 61.4
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.4e-163 580.1 437 62.2
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.9e-163 579.7 443 61.9
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 5.5e-163 578.2 444 61.7
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 7.2e-163 577.8 441 61.9
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 7.2e-163 577.8 443 61.4
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 9.4e-163 577.4 443 61.6
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 3.6e-162 575.5 437 62.5
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 3.6e-162 575.5 441 62.6
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 4.7e-162 575.1 441 62.1
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 4.7e-162 575.1 438 62.1
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 4.7e-162 575.1 437 63.4
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.7e-162 575.1 437 63.4
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 4.7e-162 575.1 443 60.3
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 4.7e-162 575.1 441 62.8
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 6.1e-162 574.7 442 62.2
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.0e-161 573.9 443 61.6
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.0e-161 573.9 437 63.4
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.4e-161 573.5 437 63.2
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.8e-161 573.2 439 61.0
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.8e-161 573.2 440 62.3
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.3e-161 572.8 441 61.5
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 2.3e-161 572.8 441 61.2
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.0e-161 572.4 443 61.9
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.9e-161 572.0 437 62.2
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 3.9e-161 572.0 443 61.2
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 3.9e-161 572.0 443 61.2
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 6.7e-161 571.2 443 61.4
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 8.8e-161 570.9 441 60.8
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.5e-160 570.1 443 60.7
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 2.0e-160 569.7 437 62.2
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.3e-160 568.9 437 61.8
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.3e-160 568.9 437 61.8
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 7.4e-160 567.8 443 61.2
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 7.4e-160 567.8 443 61.2
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 9.7e-160 567.4 440 61.6
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 1.3e-159 567.0 433 62.1
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.3e-159 567.0 444 61.9
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.7e-159 566.6 439 62.6
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.7e-159 566.6 436 62.2
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.2e-159 566.2 443 61.2
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.2e-159 566.2 456 59.4
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 2.2e-159 566.2 438 61.0
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 2.2e-159 566.2 443 61.2
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 2.8e-159 565.8 438 61.4
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 3.7e-159 565.5 437 61.1
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.7e-159 565.5 438 61.2
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 6.3e-159 564.7 436 61.7
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.4e-158 562.8 441 60.3
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 5.3e-158 561.6 441 59.6
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 9.1e-158 560.8 440 60.2
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.2e-157 560.5 437 60.6
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.0e-157 559.7 448 60.5
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 5.9e-157 558.1 498 55.2
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 7.7e-157 557.8 439 62.2
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.3e-156 557.0 433 61.2
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.3e-156 557.0 441 59.9
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.7e-156 556.6 442 60.2
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 5.0e-156 555.1 433 60.7
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.5e-155 553.5 431 61.3
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.9e-155 553.1 433 60.5
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 4.2e-155 552.0 433 60.0
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.2e-154 550.4 433 59.8
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.2e-154 550.4 433 59.8
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.2e-154 550.4 433 59.8
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 2.1e-154 549.7 434 60.4
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 5.2e-153 545.0 448 58.7
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 5.2e-153 545.0 443 59.8
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.2e-152 543.9 408 62.5
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.0e-152 543.1 443 59.6
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 3.4e-152 542.3 433 58.4
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 4.4e-152 542.0 475 55.6
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 7.5e-152 541.2 441 59.6
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.2e-151 539.7 443 58.7
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 4.8e-151 538.5 512 52.9
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 4.1e-150 535.4 443 57.3
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.0e-149 533.1 521 52.0
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.2e-148 529.6 417 60.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 3.8e-148 528.9 430 57.2
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.2e-146 523.9 411 59.6
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.1e-146 523.1 424 58.7
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.6e-146 522.3 405 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 6.1e-146 521.5 426 58.9
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 6.1e-146 521.5 395 62.3
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.8e-145 520.0 430 57.9
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 5.7e-144 515.0 444 55.9
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 4.1e-142 508.8 446 54.5
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.5e-139 499.6 340 69.7
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.8e-137 493.4 452 54.9
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.6e-136 489.6 347 67.7
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 6.3e-135 485.0 437 52.9
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 9.2e-134 481.1 436 53.2
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 4.5e-133 478.8 341 65.1
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.2e-128 464.2 440 54.5
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 7.5e-128 461.5 341 63.9
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.7e-127 460.3 331 64.4
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 8.0e-122 441.4 340 60.6
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 4.0e-121 439.1 435 51.3
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 3.4e-120 436.0 356 59.0
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.1e-118 429.1 395 54.7
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 7.3e-115 418.3 444 48.9
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 4.1e-110 402.5 298 64.4
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 4.0e-97 359.4 382 48.7
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.6e-77 294.3 246 58.9
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 4.6e-77 292.7 227 63.4
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.9e-75 287.3 353 43.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 7.9e-69 265.4 228 55.7
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.0e-55 221.9 157 65.6
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.9e-55 220.3 143 67.8
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 2.1e-53 214.2 196 54.1
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.3e-50 204.9 135 67.4
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 3.3e-43 180.3 144 56.9
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.1e-41 173.3 108 67.6
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.5e-39 165.6 107 68.2
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.2e-38 163.3 133 56.4
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 9.4e-38 162.2 240 40.4
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.5e-24 117.1 90 58.9
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 5.9e-24 116.3 165 39.4
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-22 112.1 95 57.9
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.5e-22 111.7 81 61.7
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 3.6e-21 107.1 136 41.9
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 3.0e-15 87.4 86 44.2
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 6.6e-15 86.3 160 35.0
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 4.3e-14 83.6 64 67.2
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 4.3e-14 83.6 68 54.4
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.8e-13 80.9 64 54.7
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.2e-11 75.5 57 56.1
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.4e-11 73.9 91 46.2
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 2.3e-07 61.2 112 35.7
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 3.0e-07 60.8 33 72.7
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 8.6e-07 59.3 38 63.2


User provided reference genes

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