Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 1.1e-64 250.0 136 100.0
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 3.2e-53 211.8 139 85.6
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 8.1e-41 170.6 136 65.4
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 3.8e-38 161.8 140 64.3
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 3.4e-31 138.7 134 56.7
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 4.5e-31 138.3 138 55.1
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 1.3e-30 136.7 138 54.3
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 6.5e-30 134.4 140 56.4
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 3.2e-29 132.1 136 54.4
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 3.2e-29 132.1 134 55.2
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 9.3e-29 130.6 140 55.7
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 9.3e-29 130.6 137 54.7
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 1.2e-28 130.2 140 52.9
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.2e-28 130.2 140 52.9
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 1.2e-28 130.2 139 52.5
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 1.2e-28 130.2 142 54.2
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 1.6e-28 129.8 136 54.4
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 1.6e-28 129.8 142 52.1
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 2.1e-28 129.4 137 54.0
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 4.6e-28 128.3 140 52.1
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 7.9e-28 127.5 135 51.9
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 7.9e-28 127.5 136 53.7
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 3.0e-27 125.6 140 51.4
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 5.1e-27 124.8 137 54.7
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 5.1e-27 124.8 136 52.9
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 5.1e-27 124.8 127 54.3
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 6.7e-27 124.4 134 52.2
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 6.7e-27 124.4 134 53.7
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 1.1e-26 123.6 140 50.7
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.5e-26 123.2 134 51.5
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 2.5e-26 122.5 137 47.4
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 3.3e-26 122.1 145 50.3
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.3e-26 122.1 134 52.2
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 3.3e-26 122.1 136 51.5
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 3.3e-26 122.1 135 53.3
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 3.3e-26 122.1 134 51.5
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 4.3e-26 121.7 134 52.2
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 7.4e-26 120.9 142 48.6
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 7.4e-26 120.9 134 51.5
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 1.3e-25 120.2 145 47.6
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 1.3e-25 120.2 134 51.5
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 1.6e-25 119.8 137 51.1
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 2.2e-25 119.4 135 48.1
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 2.2e-25 119.4 137 51.8
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 3.7e-25 118.6 134 51.5
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 3.7e-25 118.6 136 49.3
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 4.8e-25 118.2 134 48.5
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 4.8e-25 118.2 134 48.5
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 6.3e-25 117.9 136 50.0
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 6.3e-25 117.9 142 47.2
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 6.3e-25 117.9 136 50.0
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 6.3e-25 117.9 136 50.0
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 8.2e-25 117.5 136 50.0
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 1.1e-24 117.1 138 52.2
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 1.8e-24 116.3 138 48.6
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 1.8e-24 116.3 138 48.6
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 1.8e-24 116.3 139 48.9
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.1e-24 115.5 136 49.3
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 6.9e-24 114.4 147 49.0
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.2e-23 113.6 136 48.5
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.2e-23 113.6 136 48.5
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 2.6e-23 112.5 148 52.7
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 3.4e-23 112.1 142 47.9
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 3.4e-23 112.1 144 44.4
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 4.5e-23 111.7 144 46.5
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 5.9e-23 111.3 124 50.8
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 7.6e-23 110.9 140 47.1
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 1.0e-22 110.5 120 49.2
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 1.3e-22 110.2 139 46.8
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 1.7e-22 109.8 141 42.6
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 8.5e-22 107.5 140 44.3
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 1.1e-21 107.1 121 50.4
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 2.5e-21 105.9 142 43.7
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 4.2e-21 105.1 137 43.8
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 4.2e-21 105.1 120 48.3
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 5.5e-21 104.8 142 42.3
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 5.5e-21 104.8 93 66.7
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 2.1e-20 102.8 135 45.2
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 2.7e-20 102.4 139 43.9
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 3.6e-20 102.1 133 51.1
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 1.4e-19 100.1 135 43.7
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 1.4e-19 100.1 135 43.7
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 1.4e-19 100.1 139 46.0
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 1.4e-19 100.1 135 46.7
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 1.8e-19 99.8 135 43.7
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 3.0e-19 99.0 135 43.0
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 3.0e-19 99.0 135 43.0
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 3.0e-19 99.0 135 43.0
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 3.0e-19 99.0 135 43.0
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 3.0e-19 99.0 135 43.0
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 3.0e-19 99.0 135 43.0
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 5.1e-19 98.2 129 43.4
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 5.1e-19 98.2 135 42.2
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 6.7e-19 97.8 144 41.7
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 1.1e-18 97.1 135 41.5
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 1.9e-18 96.3 135 42.2
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 1.9e-18 96.3 135 42.2
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 1.9e-18 96.3 135 42.2
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 1.9e-18 96.3 135 42.2
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 2.5e-18 95.9 135 42.2
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 2.5e-18 95.9 135 42.2
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 3.3e-18 95.5 126 43.7
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 5.7e-18 94.7 135 43.7
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 7.4e-18 94.4 135 42.2
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 9.7e-18 94.0 133 42.9
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 9.7e-18 94.0 127 44.9
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.3e-17 93.6 139 43.9
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 3.7e-17 92.0 136 41.9
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 6.3e-17 91.3 100 50.0
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 8.2e-17 90.9 110 45.5
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 2.6e-15 85.9 124 37.9
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 2.1e-12 76.3 93 54.8
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 4.7e-12 75.1 134 39.6
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 1.4e-11 73.6 87 48.3
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 5.7e-10 68.2 134 35.1
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 8.2e-09 64.3 112 39.3
SEGI_18606 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 8.2e-09 64.3 114 39.5
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 1.4e-08 63.5 77 46.8
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 5.3e-08 61.6 40 72.5
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 1.2e-07 60.5 77 42.9
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 4.5e-07 58.5 77 45.5
COL.COLO4_21212 Corchorus olitorius HOM05D001618 ORTHO05D001486 1.7e-06 56.6 96 34.4


User provided reference genes

Program Settings