Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 0.0e+00 1355.5 733 100.0
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 0.0e+00 1167.1 734 86.9
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 0.0e+00 1147.1 805 81.5
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 1.1e-293 1013.1 737 76.4
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 8.3e-140 501.9 741 45.1
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 2.7e-138 496.9 741 42.1
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 4.6e-138 496.1 749 41.5
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 1.8e-134 484.2 736 42.7
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 3.1e-134 483.4 747 41.8
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 1.2e-133 481.5 799 43.3
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 8.6e-129 465.3 738 40.1
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 6.8e-126 455.7 675 43.7
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 3.2e-123 446.8 727 42.5
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 4.6e-122 443.0 732 40.2
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 3.9e-121 439.9 739 39.6
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.1e-120 438.3 747 38.8
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 1.5e-120 438.0 745 38.8
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 2.5e-120 437.2 735 39.3
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 2.1e-119 434.1 742 40.2
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 3.6e-119 433.3 750 42.0
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 6.2e-119 432.6 747 40.0
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 1.1e-118 431.8 771 39.7
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.4e-118 431.4 752 38.4
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 5.8e-117 426.0 724 42.7
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 6.6e-113 412.5 741 38.3
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 1.5e-112 411.4 734 36.9
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 4.3e-112 409.8 748 41.4
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 9.6e-112 408.7 735 37.1
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 2.8e-111 407.1 759 43.1
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 3.1e-110 403.7 685 39.9
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 8.4e-108 395.6 675 38.2
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 2.7e-106 390.6 666 37.5
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 3.9e-105 386.7 658 37.5
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 8.7e-105 385.6 734 38.8
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 3.3e-104 383.6 728 37.8
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 4.3e-104 383.3 675 36.7
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 1.1e-102 378.6 753 37.5
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 1.1e-102 378.6 753 37.5
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 2.4e-102 377.5 662 37.2
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 1.2e-101 375.2 940 34.1
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 1.7e-100 371.3 720 36.7
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 2.4e-99 367.5 739 36.5
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 8.7e-97 359.0 820 33.2
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 6.9e-94 349.4 735 35.6
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 9.0e-94 349.0 728 34.8
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 2.0e-93 347.8 529 40.6
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 4.5e-93 346.7 672 37.1
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 7.6e-93 345.9 724 34.1
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 9.9e-93 345.5 732 35.5
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 4.9e-92 343.2 736 34.9
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 1.1e-91 342.0 737 34.7
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 1.1e-91 342.0 735 35.1
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 1.9e-91 341.3 902 33.8
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 2.4e-91 340.9 728 33.5
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 2.4e-91 340.9 728 33.5
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 2.4e-91 340.9 728 33.5
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 4.2e-91 340.1 697 34.6
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 4.2e-91 340.1 759 32.7
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 5.5e-91 339.7 693 33.9
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 7.1e-91 339.3 737 34.7
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.3e-89 335.1 743 33.8
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 1.5e-88 331.6 733 35.7
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 2.5e-88 330.9 660 36.5
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 4.5e-85 320.1 657 33.6
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 4.5e-85 320.1 799 33.3
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 5.8e-85 319.7 741 35.0
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 5.8e-85 319.7 754 34.4
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 2.1e-82 311.2 662 33.7
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 7.9e-82 309.3 807 32.7
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 2.3e-81 307.8 661 32.5
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 8.7e-81 305.8 748 35.6
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 8.2e-79 299.3 342 49.4
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 1.1e-78 298.9 497 36.6
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 4.5e-77 293.5 666 31.2
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 4.5e-77 293.5 685 33.6
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 5.9e-77 293.1 595 33.4
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 1.4e-75 288.5 665 32.3
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 1.9e-75 288.1 735 33.1
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 7.2e-75 286.2 745 34.8
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.2e-74 285.4 768 32.0
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 3.9e-73 280.4 352 46.3
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 7.7e-69 266.2 505 34.3
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 6.1e-66 256.5 742 31.0
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 2.3e-65 254.6 740 33.1
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 7.4e-56 223.0 669 30.9
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 7.4e-56 223.0 276 44.6
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 1.7e-55 221.9 786 27.7
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 3.6e-50 204.1 418 36.6
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 4.0e-49 200.7 276 39.1
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 4.4e-48 197.2 229 46.3
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 1.1e-46 192.6 489 29.4
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 2.2e-39 168.3 160 60.6
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 7.7e-37 159.8 700 25.4
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 1.6e-34 152.1 384 40.4
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 3.8e-28 131.0 349 29.8
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 9.5e-27 126.3 454 30.6
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 1.2e-24 119.4 256 35.5
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 4.4e-24 117.5 512 24.6
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 2.9e-23 114.8 206 41.7
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 9.2e-22 109.8 153 44.4
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 3.5e-21 107.8 186 36.6
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 4.6e-21 107.5 353 31.2
Mapoly0016s0037 Marchantia polymorpha HOM05D006140 ORTHO05D007834 1.9e-19 102.1 704 21.0
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 1.9e-19 102.1 163 41.1
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.6e-18 99.0 136 46.3
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 1.6e-18 99.0 616 21.9
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.4e-17 95.9 180 44.4
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 4.4e-16 90.9 84 52.4
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 8.3e-15 86.7 265 29.1
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 2.4e-14 85.1 129 40.3
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 3.2e-14 84.7 325 33.5
SMO367G0412 Selaginella moellendorffii HOM05D006140 ORTHO05D007834 1.5e-11 75.9 605 20.2
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 4.7e-10 70.9 313 27.2
unitig_32.g10972 Utricularia gibba HOM05D006140 ORTHO05D007834 3.1e-09 68.2 161 34.8
AagrBONN_evm.TU.Sc2ySwM_344.4141 Anthoceros agrestis HOM05D006140 ORTHO05D007834 5.2e-09 67.4 176 25.0
Duzib084G0453 Durio zibethinus HOM05D006140 ORTHO05D007834 5.4e-06 57.4 84 42.9
SEGI_32981 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 5.4e-06 57.4 241 24.9


User provided reference genes

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