Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 0.0e+00 1311.2 870 100.0
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 0.0e+00 1080.5 842 84.2
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 2.9e-277 958.7 877 71.6
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 1.3e-272 943.3 861 71.3
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 3.4e-201 706.1 880 52.5
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 7.9e-198 694.9 879 54.0
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 7.7e-193 678.3 872 52.2
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 1.2e-190 671.0 880 52.7
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 1.8e-189 667.2 879 53.4
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 2.8e-187 659.8 879 52.7
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 4.8e-187 659.1 881 47.3
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 4.8e-187 659.1 879 55.3
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 1.2e-185 654.4 880 53.6
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 1.2e-185 654.4 880 53.6
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 2.6e-185 653.3 870 49.3
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 2.2e-184 650.2 879 54.3
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 3.8e-184 649.4 872 51.3
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.5e-183 647.5 879 54.0
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 7.2e-183 645.2 879 54.0
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 9.4e-183 644.8 879 52.4
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 1.0e-181 641.3 879 51.0
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 3.0e-181 639.8 878 54.8
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 9.7e-180 634.8 872 51.6
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 2.2e-179 633.6 872 50.8
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.1e-178 631.3 886 50.9
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 3.5e-177 626.3 881 49.5
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 5.9e-177 625.5 878 50.9
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 2.3e-173 613.6 878 49.0
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.5e-172 610.9 880 50.8
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 4.4e-172 609.4 880 48.4
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 5.7e-172 609.0 876 47.9
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 1.3e-171 607.8 846 47.9
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 9.1e-170 601.7 870 53.2
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 1.0e-168 598.2 873 50.9
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 3.8e-168 596.3 878 52.8
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 3.8e-168 596.3 878 49.9
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.5e-168 595.5 880 49.5
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 3.6e-166 589.7 882 44.8
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 4.7e-166 589.3 879 51.8
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.7e-163 580.9 885 50.3
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 8.3e-163 578.6 870 49.2
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 1.1e-162 578.2 876 44.6
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 1.7e-160 570.9 890 49.7
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 7.0e-154 548.9 881 48.6
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 4.6e-153 546.2 881 45.6
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.0e-152 545.0 871 46.0
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 1.0e-152 545.0 875 48.8
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 2.3e-152 543.9 871 48.8
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 3.0e-152 543.5 871 48.3
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 7.3e-151 538.9 884 48.1
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 1.8e-149 534.3 881 49.7
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 5.2e-149 532.7 884 47.9
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 6.8e-149 532.3 884 45.0
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.4e-148 530.0 887 46.3
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 6.4e-147 525.8 881 48.9
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.2e-146 521.9 878 45.0
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 9.2e-146 521.9 911 43.7
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.3e-144 518.1 879 44.6
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.7e-144 517.7 879 45.1
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 3.9e-144 516.5 882 48.3
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 6.6e-144 515.8 875 46.9
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 1.5e-143 514.6 877 45.4
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 4.7e-142 509.6 876 43.8
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.1e-141 508.4 881 45.4
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 3.1e-141 506.9 830 46.0
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 1.3e-139 501.5 872 43.2
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 2.2e-139 500.7 875 40.3
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 4.9e-139 499.6 878 47.0
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 3.2e-138 496.9 874 45.3
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 7.1e-138 495.7 827 47.3
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.6e-137 494.6 883 47.7
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 2.1e-137 494.2 887 47.6
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.0e-136 491.9 883 47.5
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 7.3e-135 485.7 877 42.8
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.6e-134 484.6 883 47.6
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 2.1e-134 484.2 883 46.4
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 2.8e-134 483.8 883 46.4
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 2.8e-134 483.8 883 46.4
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 4.7e-134 483.0 966 43.9
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 6.2e-134 482.6 874 42.9
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 2.6e-132 477.2 882 47.3
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 2.6e-132 477.2 766 48.3
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 9.9e-132 475.3 848 44.0
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 4.1e-130 469.9 872 46.9
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 4.1e-130 469.9 872 46.9
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 1.0e-128 465.3 882 46.6
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.3e-128 464.9 729 49.2
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.7e-128 464.5 729 46.6
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 1.7e-128 464.5 810 45.1
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 1.1e-127 461.8 865 41.8
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 7.3e-127 459.1 871 42.1
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 9.6e-127 458.8 872 44.6
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 1.6e-126 458.0 1002 42.9
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 4.7e-126 456.4 937 44.8
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 1.4e-125 454.9 819 40.7
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 3.1e-125 453.8 914 40.4
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 1.2e-124 451.8 873 39.7
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 2.2e-123 447.6 810 47.2
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 6.0e-121 439.5 898 43.7
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 7.8e-121 439.1 594 47.0
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 7.3e-119 432.6 844 39.7
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 3.1e-117 427.2 583 46.7
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 3.1e-117 427.2 848 41.3
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 8.4e-115 419.1 663 47.7
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.0e-112 410.6 597 48.2
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 5.6e-111 406.4 906 40.6
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 3.8e-107 393.7 828 40.6
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 6.4e-107 392.9 886 40.6
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 8.4e-107 392.5 833 39.0
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 1.1e-106 392.1 864 37.8
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 3.9e-104 383.6 877 36.5
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 1.3e-102 378.6 717 38.5
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 6.2e-102 376.3 591 46.4
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 3.1e-101 374.0 771 37.9
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 3.1e-101 374.0 597 45.2
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 2.9e-99 367.5 868 40.6
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 7.1e-98 362.8 429 50.8
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 4.1e-93 347.1 655 42.3
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 3.4e-92 344.0 875 35.1
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 1.3e-91 342.0 655 39.4
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 1.7e-91 341.7 875 36.2
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 9.7e-87 325.9 533 42.2
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 1.7e-86 325.1 856 34.1
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.4e-69 268.1 537 37.1
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.0e-68 265.0 237 64.1
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 1.0e-67 262.7 350 45.4
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 1.0e-67 262.7 350 45.4
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 2.9e-67 261.2 453 37.3
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 2.1e-65 255.0 760 32.1
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 6.1e-65 253.4 205 67.8
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 1.8e-61 241.9 538 37.2
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 1.9e-58 231.9 493 35.5
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 4.0e-56 224.2 277 50.2
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 5.7e-55 220.3 379 52.0
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 4.8e-54 217.2 486 40.1
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.4e-53 215.7 235 54.5
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 9.5e-50 203.0 271 49.8
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 1.4e-48 199.1 673 30.2
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 1.6e-44 185.7 192 59.9
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 1.6e-44 185.7 192 59.9
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 6.6e-43 180.3 354 37.0
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 1.0e-40 172.9 146 69.2
VMungo0647G2412 Vigna mungo HOM05D003496 ORTHO05D003909 2.4e-37 161.8 115 73.9
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 8.6e-35 153.3 528 31.8
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.1e-33 148.7 260 38.5
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 5.2e-32 144.1 176 52.3
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 6.4e-30 137.1 107 70.1
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 1.4e-29 136.0 645 27.9
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.9e-29 135.6 534 34.1
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 5.4e-29 134.0 222 42.3
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.6e-28 131.0 314 34.4
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 5.1e-27 127.5 270 35.6
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 5.1e-27 127.5 270 35.6
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 1.5e-26 125.9 147 46.3
Cc02_g10170 Coffea canephora HOM05D003496 ORTHO05D003909 1.1e-24 119.8 114 63.2
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.8e-24 119.0 200 40.0
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.0e-24 117.9 224 39.3
BcaB03g15987 Brassica carinata HOM05D003496 ORTHO05D003909 2.0e-23 115.5 155 47.7
TPR.G7899 Trifolium pratense HOM05D003496 ORTHO05D003909 4.9e-22 110.9 109 60.6
VMungo0647G2290 Vigna mungo HOM05D003496 ORTHO05D003909 1.1e-21 109.8 86 67.4
SMO230G0003 Selaginella moellendorffii HOM05D003496 ORTHO05D003909 3.3e-18 98.2 407 29.0
SHI03714 Sapria himalayana HOM05D003496 ORTHO05D003909 4.3e-18 97.8 112 54.5
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 6.2e-17 94.0 66 77.3
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 1.4e-16 92.8 129 43.4
Cc02_g31800 Coffea canephora HOM05D003496 ORTHO05D003909 3.4e-15 88.2 112 50.0
FvH4_5g37878 Fragaria vesca HOM05D003496 ORTHO05D003909 4.4e-15 87.8 83 62.7
Haze_22265 Corylus avellana HOM05D003496 ORTHO05D003909 4.9e-14 84.3 70 68.6
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 6.4e-14 84.0 196 51.0
RcHm_v2.0_Chr7g0227211 Rosa chinensis HOM05D003496 ORTHO05D003909 4.2e-13 81.3 73 64.4
BcaC08g44544 Brassica carinata HOM05D003496 ORTHO05D003909 1.2e-12 79.7 103 52.4
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 7.8e-12 77.0 97 50.5
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 1.3e-11 76.3 67 61.2
TPR.G16743 Trifolium pratense HOM05D003496 ORTHO05D003909 3.9e-11 74.7 69 65.2
RcHm_v2.0_Chr7g0243501 Rosa chinensis HOM05D003496 ORTHO05D003909 1.1e-10 73.2 56 71.4
SHI03711 Sapria himalayana HOM05D003496 ORTHO05D003909 4.3e-10 71.2 91 47.3
Glyma.02G069400 Glycine max HOM05D000487 ORTHO05D000405 5.6e-10 70.9 55 65.5
Glyma.13G224300 Glycine max HOM05D000487 ORTHO05D000405 5.6e-10 70.9 55 65.5
SEGI_27299 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 9.6e-10 70.1 428 24.1
RcHm_v2.0_Chr0c28g0500891 Rosa chinensis HOM05D003496 ORTHO05D003909 2.1e-09 68.9 95 48.4
CBR_g45286 Chara braunii HOM05D003496 ORTHO05D003909 4.8e-09 67.8 90 42.2
MBI16_g15384_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D003909 5.3e-08 64.3 79 50.6
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 6.9e-08 63.9 587 21.8
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 9.0e-08 63.5 88 47.7
RcHm_v2.0_Chr2g0168611 Rosa chinensis HOM05D003496 ORTHO05D003909 1.5e-07 62.8 62 61.3
SEGI_01702 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 4.4e-07 61.2 84 41.7
TPR.G33088 Trifolium pratense HOM05D003496 ORTHO05D003909 2.2e-06 58.9 38 71.1


User provided reference genes

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