Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 2.9e-254 881.3 428 100.0
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 3.8e-217 758.1 375 97.3
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.3e-193 679.9 400 83.0
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 2.2e-185 652.5 367 85.8
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 2.3e-158 562.8 353 75.9
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 7.0e-155 551.2 350 74.6
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.2e-153 546.2 359 73.0
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 8.5e-153 544.3 371 70.4
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 8.5e-153 544.3 353 73.7
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.9e-152 543.1 349 73.9
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.9e-152 543.1 367 71.7
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.2e-152 542.3 354 73.2
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.6e-151 538.9 350 72.6
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.7e-151 538.5 353 71.7
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 2.3e-150 536.2 366 70.8
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.3e-150 536.2 366 70.8
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 4.0e-150 535.4 368 69.0
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 8.8e-150 534.3 366 70.8
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 3.3e-149 532.3 355 72.7
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.7e-149 531.6 344 72.4
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 9.7e-149 530.8 361 70.1
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.3e-148 530.4 366 69.7
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 1.3e-148 530.4 371 68.2
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 1.7e-148 530.0 351 71.5
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 6.3e-148 528.1 366 68.9
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 8.2e-148 527.7 347 70.6
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.8e-147 526.6 353 71.1
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 2.4e-147 526.2 369 69.9
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.1e-147 525.4 358 67.6
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 4.1e-147 525.4 348 70.7
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.2e-146 523.9 348 70.4
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 5.9e-146 521.5 350 69.4
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.0e-145 520.8 350 69.7
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.0e-145 520.8 352 69.3
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.0e-145 520.8 355 69.3
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.3e-145 520.4 357 70.6
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 2.2e-145 519.6 355 70.1
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.2e-145 519.6 349 70.5
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.2e-145 519.6 352 69.9
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.8e-145 518.8 352 68.8
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 3.8e-145 518.8 352 68.8
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 3.8e-145 518.8 358 70.9
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.1e-144 517.3 382 65.7
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.5e-144 516.9 356 68.5
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.9e-144 516.5 385 65.2
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.9e-144 516.5 361 67.9
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 4.2e-144 515.4 362 68.2
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 4.2e-144 515.4 357 69.7
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.6e-143 513.5 349 69.1
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.6e-143 513.5 391 64.7
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.7e-143 512.7 365 67.7
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.7e-143 512.7 355 69.0
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 3.6e-143 512.3 351 69.8
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 1.4e-142 510.4 362 68.5
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.8e-142 510.0 354 66.9
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.8e-142 510.0 366 68.9
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 2.3e-142 509.6 385 64.4
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 2.3e-142 509.6 356 69.1
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 4.0e-142 508.8 361 68.4
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 5.7e-141 505.0 358 67.9
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 7.5e-141 504.6 349 68.8
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.3e-140 503.8 353 69.1
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.7e-140 503.4 362 67.7
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 2.8e-140 502.7 370 65.7
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 6.3e-140 501.5 355 67.6
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 8.3e-140 501.1 354 66.9
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.1e-139 500.7 361 67.0
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.4e-139 500.4 359 67.4
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.4e-139 500.4 353 66.0
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.4e-139 500.4 353 68.0
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.8e-139 500.0 378 64.3
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 3.1e-139 499.2 355 66.2
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 7.7e-138 494.6 374 65.2
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.3e-137 493.8 410 59.5
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-137 493.4 348 66.4
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 2.9e-137 492.7 355 65.6
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 3.8e-137 492.3 349 67.6
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 3.8e-137 492.3 358 66.2
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.0e-137 491.9 360 66.7
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 5.0e-137 491.9 334 68.6
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 1.1e-136 490.7 364 64.3
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.5e-136 490.3 360 66.9
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 2.5e-136 489.6 348 65.8
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 3.6e-135 485.7 352 67.0
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 4.7e-135 485.3 376 62.8
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 1.8e-134 483.4 353 64.9
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 3.0e-134 482.6 356 66.3
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 6.8e-134 481.5 349 64.5
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 3.4e-133 479.2 302 73.5
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 7.5e-133 478.0 380 61.3
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.7e-132 475.7 334 68.3
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.7e-132 475.7 352 64.8
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.9e-132 475.3 302 72.8
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 6.3e-132 474.9 304 72.7
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 6.3e-132 474.9 344 65.4
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 8.3e-132 474.6 360 64.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 3.1e-131 472.6 359 62.7
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.2e-130 470.7 328 68.0
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.6e-130 470.3 357 64.4
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 1.0e-129 467.6 275 77.8
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.1e-128 464.2 312 69.9
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 7.3e-128 461.5 329 65.7
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 8.0e-127 458.0 359 62.4
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 1.4e-126 457.2 327 66.1
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 4.0e-126 455.7 303 70.3
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 5.2e-126 455.3 327 66.1
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.0e-125 453.4 355 62.0
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.3e-124 450.7 331 67.4
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 3.7e-124 449.1 316 68.7
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.4e-123 446.4 302 69.5
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 6.2e-119 431.8 263 75.3
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 6.8e-118 428.3 378 60.1
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-113 414.1 334 62.0
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.5e-112 410.6 249 75.1
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 3.6e-111 406.0 476 46.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 3.6e-111 406.0 329 61.1
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 2.3e-110 403.3 321 60.7
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.9e-107 393.7 262 72.5
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.0e-105 387.9 248 74.2
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 3.0e-105 386.3 250 74.0
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.6e-104 382.1 389 50.6
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 2.8e-103 379.8 245 72.2
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.7e-103 379.0 219 81.3
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 1.4e-99 367.5 251 69.7
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.1e-98 363.6 356 52.5
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 4.6e-98 362.5 294 59.9
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 6.0e-98 362.1 384 49.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.3e-97 360.1 383 51.7
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.3e-95 354.4 322 56.5
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.8e-94 350.5 381 50.4
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.2e-93 347.8 404 47.5
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.6e-93 346.7 217 77.4
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 6.4e-92 342.0 297 53.9
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 4.2e-91 339.3 358 48.0
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 2.5e-88 330.1 205 73.2
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 4.0e-86 322.8 294 58.2
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 4.5e-85 319.3 252 62.3
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.9e-83 313.9 285 56.1
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.2e-82 311.2 229 66.8
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.3e-80 302.8 197 72.1
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 6.9e-78 295.4 278 51.1
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.8e-77 292.4 193 72.0
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.8e-76 289.7 302 51.0
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 9.3e-75 285.0 192 65.6
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-70 270.0 193 67.9
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.0e-68 265.0 194 67.5
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.9e-67 260.8 329 46.5
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.7e-58 230.3 134 79.1
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 6.7e-49 199.1 158 59.5
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.4e-48 195.7 125 68.8
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.4e-46 190.7 420 30.7
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 3.8e-44 183.3 340 38.5
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.1e-43 181.8 208 52.4
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 4.4e-40 169.9 116 69.8
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 6.3e-39 166.0 223 37.7
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 5.3e-38 162.9 157 51.0
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.6e-37 161.4 308 30.2
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.6e-37 160.6 331 36.0
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-36 158.7 89 79.8
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.2e-26 125.2 219 33.3
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 3.3e-19 100.5 67 67.2
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.4e-16 90.5 82 54.9
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 4.9e-15 86.7 97 51.5
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.6e-13 81.6 67 52.2
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 2.3e-12 77.8 79 48.1
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 5.0e-12 76.6 79 48.1
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.6e-11 73.2 45 71.1
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 1.6e-10 71.6 49 65.3
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 5.2e-09 66.6 47 68.1
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.9e-07 60.8 41 65.9
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 8.3e-07 59.3 41 63.4
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.4e-06 56.6 76 43.4


User provided reference genes

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