Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 1.2e-40 169.5 93 100.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 4.0e-39 164.5 93 96.8
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 2.4e-36 155.2 93 92.5
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 2.4e-28 128.6 94 77.7
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.0e-26 123.2 94 75.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.0e-26 121.7 94 74.5
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 3.9e-26 121.3 94 72.3
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 4.3e-25 117.9 95 72.6
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 2.8e-24 115.2 96 69.8
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 2.8e-24 115.2 96 68.8
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 2.8e-24 115.2 96 67.7
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.8e-24 115.2 95 69.5
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 3.6e-24 114.8 94 70.2
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 68.1
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 67.0
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 67.0
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 68.1
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.4e-23 112.8 93 68.8
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.4e-23 112.8 94 67.0
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 1.8e-23 112.5 94 69.1
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 3.1e-23 111.7 94 67.0
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 3.1e-23 111.7 94 70.2
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.1e-23 111.7 96 74.0
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 67.0
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 67.0
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 4.0e-23 111.3 84 71.4
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 5.2e-23 110.9 96 67.7
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 5.2e-23 110.9 93 68.8
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 5.2e-23 110.9 95 68.4
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 5.2e-23 110.9 95 68.4
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 5.2e-23 110.9 94 71.3
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 6.8e-23 110.5 94 68.1
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 6.8e-23 110.5 94 67.0
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 8.9e-23 110.2 94 64.9
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.2e-22 109.8 94 70.2
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.5e-22 109.4 94 71.3
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 9.9e-22 106.7 94 67.0
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 9.9e-22 106.7 94 67.0
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 1.7e-21 105.9 94 67.0
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 1.7e-21 105.9 94 67.0
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.7e-21 105.9 94 67.0
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 2.2e-21 105.5 94 66.0
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 3.7e-21 104.8 93 67.7
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.7e-21 104.8 83 72.3
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 3.7e-21 104.8 94 67.0
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 4.9e-21 104.4 94 67.0
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 6.4e-21 104.0 93 68.8
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 1.4e-20 102.8 93 61.3
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.4e-20 102.8 94 66.0
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.4e-20 102.1 97 67.0
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 3.2e-20 101.7 94 68.1
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 4.1e-20 101.3 92 65.2
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.4e-20 100.9 85 69.4
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 7.1e-20 100.5 118 55.9
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 7.1e-20 100.5 94 67.0
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 2.1e-19 99.0 96 64.6
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 2.7e-19 98.6 94 62.8
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 3.5e-19 98.2 94 62.8
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 4.6e-19 97.8 94 64.9
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 6.0e-19 97.4 83 71.1
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 1.0e-18 96.7 83 69.9
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.3e-18 96.3 94 64.9
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 2.3e-18 95.5 83 68.7
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 3.9e-18 94.7 88 68.2
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.1e-18 94.4 84 65.5
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.5e-17 92.8 118 52.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 2.5e-17 92.0 83 67.5
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 2.5e-17 92.0 83 67.5
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 2.5e-17 92.0 82 67.1
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 4.3e-17 91.3 83 65.1
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 5.6e-17 90.9 86 64.0
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 7.3e-17 90.5 82 65.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.6e-16 89.4 100 57.0
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.1e-16 89.0 95 62.1
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 2.8e-16 88.6 83 61.4
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 2.8e-16 88.6 93 57.0
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 4.7e-16 87.8 84 64.3
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 4.7e-16 87.8 95 63.2
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.1e-15 86.7 78 64.1
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.8e-15 85.9 85 60.0
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 2.4e-15 85.5 77 67.5
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 3.1e-15 85.1 131 45.8
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.5e-14 82.8 51 86.3
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 60.5
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 4.4e-14 81.3 59 76.3
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 5.8e-14 80.9 93 58.1
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 7.6e-14 80.5 47 91.5
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 9.9e-14 80.1 51 82.4
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.3e-13 79.7 70 67.1
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.3e-13 79.7 84 57.1
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 1.3e-13 79.7 83 59.0
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 2.9e-13 78.6 83 57.8
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 3.8e-13 78.2 96 56.2
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 8.4e-13 77.0 87 56.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 8.4e-13 77.0 82 57.3
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.4e-12 76.3 95 53.7
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 9.3e-12 73.6 88 54.5
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 8.7e-10 67.0 80 52.5
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 1.1e-09 66.6 53 69.8
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 2.5e-09 65.5 85 55.3
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 4.3e-09 64.7 93 49.5
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 4.3e-09 64.7 102 46.1
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 5.6e-09 64.3 88 52.3
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 5.6e-09 64.3 88 52.3
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 7.3e-09 63.9 86 50.0
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 9.6e-09 63.5 95 45.3
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.3e-08 63.2 106 45.3
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 2.1e-08 62.4 95 46.3
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 2.1e-08 62.4 95 46.3
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.1e-08 62.4 108 44.4
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 2.8e-08 62.0 86 48.8
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 2.8e-08 62.0 86 48.8
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 4.8e-08 61.2 88 51.1
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 4.8e-08 61.2 96 49.0
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 6.2e-08 60.8 100 48.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 6.2e-08 60.8 86 46.5
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 6.2e-08 60.8 86 46.5
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 6.2e-08 60.8 86 48.8
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 8.1e-08 60.5 62 58.1
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 8.1e-08 60.5 102 46.1
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 8.1e-08 60.5 93 44.1
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 8.1e-08 60.5 105 44.8
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 8.1e-08 60.5 93 47.3
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 8.1e-08 60.5 96 46.9
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 8.1e-08 60.5 99 43.4
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.1e-07 60.1 86 46.5
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.4e-07 59.7 91 48.4
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.8e-07 59.3 102 42.2
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 2.4e-07 58.9 104 43.3
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 3.1e-07 58.5 84 45.2
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 4.0e-07 58.2 93 43.0
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 4.0e-07 58.2 84 50.0
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 4.0e-07 58.2 54 55.6
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 4.0e-07 58.2 87 48.3
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 5.3e-07 57.8 105 44.8
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.3e-07 57.8 47 66.0
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.3e-07 57.8 47 66.0
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.3e-07 57.8 98 45.9
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 6.9e-07 57.4 105 42.9
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 6.9e-07 57.4 45 75.6
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 9.0e-07 57.0 63 54.0
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 1.2e-06 56.6 84 44.0
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.2e-06 56.6 103 40.8
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 1.5e-06 56.2 64 53.1
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.5e-06 56.2 66 51.5
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 2.0e-06 55.8 75 46.7
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.0e-06 55.8 99 46.5
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.6e-06 55.5 98 44.9
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 2.6e-06 55.5 86 46.5
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 3.4e-06 55.1 103 42.7
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 3.4e-06 55.1 76 52.6
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.4e-06 55.1 102 44.1
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 3.4e-06 55.1 66 54.5
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 3.4e-06 55.1 54 53.7
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 3.4e-06 55.1 103 40.8
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 4.4e-06 54.7 78 48.7
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 4.4e-06 54.7 62 53.2
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 5.8e-06 54.3 76 50.0
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 5.8e-06 54.3 110 40.9
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 7.6e-06 53.9 62 51.6
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 7.6e-06 53.9 77 55.8


User provided reference genes

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