Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 4.6e-74 281.2 146 100.0
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 2.8e-71 271.9 146 95.2
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 4.2e-67 258.1 146 90.4
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 4.5e-53 211.5 147 76.9
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 1.8e-49 199.5 146 73.3
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 7.1e-43 177.6 149 65.8
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 2.5e-40 169.1 147 63.9
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 2.2e-39 166.0 146 61.0
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 2.8e-39 165.6 148 64.9
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 2.8e-39 165.6 159 60.4
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 6.3e-39 164.5 154 61.0
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 6.3e-39 164.5 146 60.3
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 8.2e-39 164.1 146 60.3
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 1.1e-38 163.7 113 74.3
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.1e-38 163.7 148 61.5
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 1.8e-38 162.9 151 62.3
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 2.4e-38 162.5 146 62.3
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 3.1e-38 162.2 108 74.1
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 3.1e-38 162.2 146 60.3
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 5.3e-38 161.4 153 58.2
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 1.2e-37 160.2 148 61.5
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 1.2e-37 160.2 152 57.9
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 1.5e-37 159.8 146 57.5
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.5e-37 159.8 147 59.2
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.5e-37 159.8 100 76.0
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 2.0e-37 159.5 118 66.9
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 2.6e-37 159.1 147 60.5
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 2.6e-37 159.1 147 58.5
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 4.5e-37 158.3 154 56.5
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 7.7e-37 157.5 149 60.4
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 1.3e-36 156.8 151 58.3
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 1.3e-36 156.8 152 57.2
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 1.3e-36 156.8 109 70.6
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.7e-36 156.4 147 59.2
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.7e-36 156.4 147 59.2
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 2.2e-36 156.0 99 74.7
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 2.2e-36 156.0 149 59.7
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 2.9e-36 155.6 99 75.8
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 3.8e-36 155.2 100 75.0
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 3.8e-36 155.2 148 58.8
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 6.5e-36 154.5 109 73.4
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 6.5e-36 154.5 122 64.8
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 6.5e-36 154.5 99 75.8
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 8.5e-36 154.1 146 56.2
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 1.1e-35 153.7 129 63.6
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 1.1e-35 153.7 146 57.5
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 2.5e-35 152.5 109 72.5
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 3.2e-35 152.1 136 57.4
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 3.2e-35 152.1 99 74.7
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 4.2e-35 151.8 130 61.5
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 9.4e-35 150.6 146 54.8
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 2.1e-34 149.4 145 60.0
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 2.7e-34 149.1 148 59.5
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 1.4e-33 146.7 146 56.8
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 2.3e-33 146.0 149 57.7
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 3.9e-33 145.2 117 61.5
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 5.1e-33 144.8 108 63.0
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 6.7e-33 144.4 117 61.5
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 6.7e-33 144.4 142 57.7
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 1.9e-32 142.9 143 55.9
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 2.5e-32 142.5 135 56.3
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 3.3e-32 142.1 145 51.7
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 3.3e-32 142.1 107 66.4
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 3.3e-32 142.1 122 59.0
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 4.3e-32 141.7 118 62.7
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 9.7e-32 140.6 144 55.6
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 9.7e-32 140.6 96 68.8
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 2.8e-31 139.0 96 68.8
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 3.7e-31 138.7 145 53.8
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 3.7e-31 138.7 145 53.8
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 3.7e-31 138.7 96 68.8
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 1.4e-30 136.7 118 60.2
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 3.1e-30 135.6 121 58.7
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 5.3e-30 134.8 111 60.4
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 6.9e-30 134.4 106 61.3
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 9.1e-30 134.0 109 59.6
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 9.1e-30 134.0 106 64.2
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 1.2e-29 133.7 143 51.7
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 1.5e-29 133.3 112 57.1
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 2.0e-29 132.9 118 56.8
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 2.0e-29 132.9 146 54.8
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 2.6e-29 132.5 105 62.9
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 2.6e-29 132.5 105 62.9
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 3.4e-29 132.1 115 60.0
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 3.4e-29 132.1 111 62.2
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 3.4e-29 132.1 97 68.0
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 4.5e-29 131.7 139 50.4
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 4.5e-29 131.7 157 49.0
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 5.9e-29 131.3 148 52.0
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 7.7e-29 131.0 146 53.4
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 1.3e-28 130.2 149 51.7
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 1.3e-28 130.2 98 64.3
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 1.7e-28 129.8 141 50.4
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 2.2e-28 129.4 93 66.7
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 2.2e-28 129.4 100 63.0
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 3.8e-28 128.6 99 61.6
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 5.0e-28 128.3 123 56.1
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 8.5e-28 127.5 141 48.2
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 1.6e-26 123.2 143 50.3
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 3.6e-26 122.1 150 48.7
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 3.6e-26 122.1 156 45.5
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 4.7e-26 121.7 165 44.2
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 1.4e-25 120.2 95 61.1
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 3.0e-25 119.0 148 52.0
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 5.7e-24 114.8 85 67.1
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 2.4e-22 109.4 121 52.9
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 5.3e-22 108.2 223 36.3
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 7.7e-21 104.4 98 58.2
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 1.0e-20 104.0 61 78.7
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 2.1e-18 96.3 106 45.3
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 1.0e-17 94.0 83 61.4
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 2.3e-17 92.8 102 46.1
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 3.9e-17 92.0 110 52.7
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 5.2e-17 91.7 57 71.9
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 1.4e-14 83.6 103 50.5
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 3.1e-14 82.4 96 43.8
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 7.0e-14 81.3 115 37.4
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 7.0e-14 81.3 111 35.1
Rhsim07G0144900 Rhododendron simsii HOM05D006497 ORTHO05D008263 9.4e-11 70.9 46 69.6
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 3.3e-08 62.4 95 37.9
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 3.7e-07 58.9 96 31.2


User provided reference genes

Program Settings