Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 2.5e-103 378.6 175 100.0
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 9.0e-101 370.2 175 96.0
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 9.0e-101 370.2 175 95.4
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 1.5e-100 369.4 175 94.9
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 2.0e-100 369.0 175 95.4
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 4.5e-100 367.9 175 95.4
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 5.8e-100 367.5 172 95.9
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 7.6e-100 367.1 175 94.3
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.0e-99 366.7 175 94.3
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.0e-99 366.7 175 94.3
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.0e-99 366.7 175 94.3
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.0e-99 366.7 175 94.9
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 1.3e-99 366.3 175 94.3
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.7e-99 365.9 175 93.7
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 1.7e-99 365.9 175 93.1
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 1.7e-99 365.9 175 94.9
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 1.7e-99 365.9 175 93.7
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 2.2e-99 365.5 175 94.9
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 2.2e-99 365.5 175 94.9
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 2.9e-99 365.2 175 93.7
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 3.8e-99 364.8 175 94.3
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 3.8e-99 364.8 175 94.3
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 3.8e-99 364.8 175 93.7
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 3.8e-99 364.8 175 94.3
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 6.5e-99 364.0 175 93.1
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 8.4e-99 363.6 175 93.7
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 1.1e-98 363.2 175 92.6
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 1.1e-98 363.2 175 92.0
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.1e-98 363.2 174 93.7
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 1.4e-98 362.8 175 92.0
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 1.9e-98 362.5 172 94.8
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 2.5e-98 362.1 175 93.1
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 2.5e-98 362.1 175 93.1
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 2.5e-98 362.1 175 92.0
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 93.1
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 3.2e-98 361.7 175 92.0
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 3.2e-98 361.7 174 92.5
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 4.2e-98 361.3 175 92.6
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 93.1
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 93.1
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 93.1
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 5.5e-98 360.9 175 92.0
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 7.1e-98 360.5 175 93.1
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 7.1e-98 360.5 175 92.0
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 9.3e-98 360.1 175 92.6
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 93.7
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 92.0
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 1.2e-97 359.8 175 90.9
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 90.9
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 90.9
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 1.6e-97 359.4 175 91.4
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 2.1e-97 359.0 175 91.4
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 92.0
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 90.9
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 2.7e-97 358.6 175 90.9
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 3.5e-97 358.2 175 90.9
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 91.4
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.0
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 90.3
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 91.4
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 91.4
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 92.0
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 4.6e-97 357.8 175 90.9
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 6.0e-97 357.5 174 92.0
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 6.0e-97 357.5 173 91.9
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 6.0e-97 357.5 175 91.4
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 90.9
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 91.4
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 91.4
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 7.9e-97 357.1 175 91.4
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 90.9
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 90.9
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 90.9
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 90.9
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 1.0e-96 356.7 175 90.9
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 91.4
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 90.9
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 1.3e-96 356.3 174 90.8
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 90.3
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 1.3e-96 356.3 175 92.6
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 1.8e-96 355.9 175 90.3
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 3.0e-96 355.1 175 90.3
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 3.9e-96 354.8 175 90.3
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 5.1e-96 354.4 175 90.3
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 6.7e-96 354.0 175 90.9
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 8.7e-96 353.6 175 90.3
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 1.1e-95 353.2 174 93.1
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 1.1e-95 353.2 174 90.8
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 1.1e-95 353.2 175 90.9
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 1.5e-95 352.8 174 89.7
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 1.5e-95 352.8 175 90.9
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 1.9e-95 352.4 175 89.7
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 4.3e-95 351.3 173 91.3
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 7.4e-95 350.5 175 89.7
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 2.1e-94 349.0 172 90.1
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 2.1e-94 349.0 172 90.1
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 2.1e-94 349.0 173 90.2
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 2.1e-94 349.0 175 90.3
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 2.8e-94 348.6 175 89.1
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.8e-94 347.8 174 87.9
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.8e-94 347.8 174 87.9
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 4.8e-94 347.8 175 88.6
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 6.2e-94 347.4 175 89.1
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 1.4e-93 346.3 174 88.5
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 2.4e-93 345.5 167 89.8
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.5e-92 342.8 175 90.3
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 3.4e-92 341.7 173 89.6
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 3.2e-90 335.1 175 86.3
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 1.2e-89 333.2 175 86.3
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 1.1e-87 326.6 244 66.0
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 2.2e-86 322.4 150 98.7
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 1.8e-85 319.3 173 83.8
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 4.1e-85 318.2 174 79.9
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 9.0e-85 317.0 174 78.7
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 6.5e-83 310.8 171 80.1
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 1.0e-80 303.5 181 80.7
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 8.8e-80 300.4 173 76.9
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 2.2e-78 295.8 175 75.4
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 6.5e-75 284.3 165 72.7
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 1.2e-73 280.0 131 94.7
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 2.1e-73 279.3 172 79.1
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.5e-71 273.1 131 91.6
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 2.0e-71 272.7 132 90.9
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 4.5e-68 261.5 164 70.1
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 3.6e-65 251.9 125 91.2
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 2.6e-63 245.7 124 91.9
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 2.9e-59 232.3 112 92.0
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 5.2e-56 221.5 119 81.5
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 5.2e-56 221.5 125 80.0
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 2.2e-54 216.1 114 86.0
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 4.8e-54 214.9 166 57.2
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 2.0e-52 209.5 112 81.2
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 8.5e-51 204.1 104 88.5
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 9.8e-47 190.7 142 69.0
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 4.1e-45 185.3 91 91.2
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 2.0e-36 156.4 88 78.4
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 2.3e-35 152.9 177 50.3
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 2.3e-32 142.9 109 62.4
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 9.8e-31 137.5 114 61.4
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 7.8e-28 127.9 66 86.4
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 7.5e-23 111.3 92 55.4


User provided reference genes

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