Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 6.5e-169 597.4 330 100.0
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.5e-157 559.7 331 94.9
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.3e-140 503.4 331 84.6
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.7e-137 493.0 331 86.4
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.6e-135 486.5 331 77.3
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 4.6e-98 362.1 329 63.2
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 2.3e-97 359.8 325 57.2
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 4.5e-93 345.5 329 54.4
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.2e-92 343.2 329 60.5
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.1e-91 340.9 329 59.3
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.4e-91 340.5 331 58.9
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.5e-91 339.7 329 59.0
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 3.2e-91 339.3 332 60.8
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.2e-90 337.4 327 53.8
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 6.1e-90 335.1 325 56.0
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 6.1e-90 335.1 331 59.5
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 7.9e-90 334.7 331 59.8
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 7.4e-88 328.2 329 52.3
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 9.7e-88 327.8 331 57.7
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 3.1e-86 322.8 332 51.8
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.0e-86 321.2 323 52.0
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 9.0e-86 321.2 332 59.9
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.5e-85 320.5 323 51.7
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.6e-85 319.7 323 51.7
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.3e-84 317.4 332 58.7
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.2e-84 316.6 331 53.2
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.5e-84 315.1 333 59.5
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.1e-83 314.3 335 52.5
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.4e-83 313.9 333 52.3
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 9.4e-83 311.2 337 59.1
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.1e-82 308.5 325 50.8
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 3.0e-81 306.2 328 51.2
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 5.1e-81 305.4 329 54.4
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.1e-81 305.4 332 49.7
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.0e-80 303.5 385 47.3
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.2e-79 300.1 332 50.6
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.2e-79 300.1 332 51.2
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 6.3e-79 298.5 332 49.1
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.1e-78 297.7 332 48.8
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 2.4e-78 296.6 331 47.4
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.4e-78 296.6 332 52.7
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 6.9e-78 295.0 332 54.2
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 9.1e-78 294.7 339 52.8
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 2.0e-77 293.5 332 51.8
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 5.9e-77 292.0 332 48.5
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.3e-76 290.8 333 56.5
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.3e-76 290.8 332 53.0
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.3e-76 290.8 320 56.6
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 5.0e-76 288.9 333 50.2
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.2e-75 286.2 335 49.6
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.1e-74 282.0 284 60.6
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.1e-74 282.0 284 60.6
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.0e-73 281.2 320 51.6
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.0e-73 281.2 333 51.7
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.4e-73 280.8 336 48.8
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 2.6e-72 276.6 332 45.5
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 7.4e-72 275.0 331 48.0
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.7e-71 273.9 331 48.6
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.2e-71 273.5 333 48.6
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.8e-71 273.1 330 47.6
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 4.8e-71 272.3 331 46.5
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 6.3e-71 271.9 331 48.3
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 8.2e-71 271.6 331 49.2
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.8e-70 270.4 333 48.6
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 2.6e-69 266.5 331 52.3
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.6e-69 266.5 332 47.6
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.5e-69 266.2 403 44.4
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.3e-68 264.2 332 45.2
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.3e-68 264.2 388 41.8
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 2.2e-68 263.5 332 48.5
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 8.5e-68 261.5 329 50.8
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.5e-67 260.0 333 53.2
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.5e-67 260.0 333 53.2
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.2e-67 259.2 328 45.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 4.2e-67 259.2 328 51.2
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 5.5e-67 258.8 331 49.5
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.7e-66 256.5 332 50.6
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.0e-65 254.6 332 51.2
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 3.0e-65 253.1 388 40.5
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.9e-65 252.7 332 47.0
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.2e-65 252.3 332 50.9
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.4e-64 249.2 323 48.9
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 7.4e-64 248.4 332 47.6
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 3.7e-63 246.1 330 47.3
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 6.3e-63 245.4 340 50.0
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 5.3e-62 242.3 326 43.6
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 7.0e-62 241.9 307 46.6
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.5e-61 239.6 319 46.4
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 5.9e-61 238.8 390 47.9
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 5.0e-60 235.7 323 50.8
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 8.5e-60 235.0 337 48.4
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.5e-59 234.2 323 45.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.0e-57 228.0 328 48.2
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 8.8e-57 224.9 326 41.1
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.8e-55 219.2 330 48.8
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 6.3e-55 218.8 348 42.2
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.4e-54 217.6 371 37.7
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 2.4e-54 216.9 274 43.1
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.6e-53 214.2 303 43.6
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.6e-53 214.2 310 47.1
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 2.0e-53 213.8 338 39.1
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 2.7e-53 213.4 331 48.6
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.7e-53 213.4 288 44.4
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 3.5e-53 213.0 334 47.9
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.0e-52 211.5 334 39.8
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.2e-52 210.3 334 46.4
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 2.9e-52 209.9 270 47.4
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 6.5e-52 208.8 334 47.3
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 8.5e-52 208.4 302 48.0
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 2.5e-51 206.8 302 49.7
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 5.5e-51 205.7 278 44.2
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 7.2e-51 205.3 351 38.5
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 9.4e-51 204.9 302 47.0
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.6e-50 204.1 308 47.4
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.6e-50 204.1 340 38.5
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 3.6e-50 203.0 331 38.7
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 4.7e-50 202.6 311 46.6
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 6.1e-50 202.2 363 44.1
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 3.0e-49 199.9 366 38.0
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 6.8e-49 198.7 341 40.2
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 8.8e-49 198.4 308 41.2
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 3.7e-47 193.0 195 51.8
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 4.1e-46 189.5 389 35.5
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.1e-46 189.5 309 46.3
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 9.1e-46 188.3 305 45.6
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.9e-45 185.7 263 48.7
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-43 181.4 332 40.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.1e-43 181.4 332 40.1
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.9e-43 180.6 262 48.9
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.3e-43 179.9 293 37.5
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 7.2e-43 178.7 307 44.6
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 4.7e-42 176.0 332 40.7
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 5.7e-40 169.1 122 68.0
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 4.6e-37 159.5 123 63.4
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 3.3e-35 153.3 316 35.1
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 3.3e-35 153.3 210 39.5
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 2.3e-33 147.1 329 31.6
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.1e-33 146.7 371 30.5
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 7.5e-32 142.1 176 45.5
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.3e-31 141.4 249 45.4
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-31 141.0 126 54.8
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 7.0e-30 135.6 151 52.3
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.0e-29 134.0 159 44.7
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.0e-29 134.0 159 44.7
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 6.0e-29 132.5 264 41.7
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.8e-29 132.1 184 44.0
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.3e-28 131.3 308 31.5
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.3e-28 131.3 152 46.7
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.9e-28 129.8 180 45.0
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.9e-27 127.5 124 53.2
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 7.3e-27 125.6 124 46.0
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.7e-23 114.4 257 31.9
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-23 114.4 136 50.7
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 3.7e-23 113.2 231 36.8
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-23 113.2 135 51.1
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-23 113.2 193 40.9
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 6.4e-23 112.5 223 34.5
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.1e-22 111.7 174 42.0
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.1e-22 109.8 374 25.4
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.1e-21 107.5 266 33.5
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 2.3e-20 104.0 102 53.9
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 5.2e-17 92.8 84 54.8
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.5e-16 91.3 141 41.8
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.7e-15 87.8 99 46.5
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 6.4e-15 85.9 124 40.3
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 6.4e-15 85.9 124 40.3
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 6.4e-15 85.9 273 28.9
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.7e-13 80.5 48 75.0
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 5.1e-12 76.3 126 38.1
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-11 75.1 88 51.1
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 5.6e-11 72.8 330 25.5
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 6.2e-10 69.3 60 56.7
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-09 67.8 51 62.7
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 8.9e-09 65.5 102 42.2
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-08 65.1 217 30.0
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.2e-08 65.1 217 30.0
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.7e-07 61.2 86 36.0


User provided reference genes

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