Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1942.9 999 100.0
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1793.9 1099 87.0
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1768.4 1000 89.4
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1753.0 963 92.9
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1718.7 1009 87.3
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1528.5 1011 77.7
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1515.4 1026 75.0
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1512.3 1011 76.6
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1509.6 1011 76.3
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1496.9 1007 75.6
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1495.3 1012 75.1
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1488.8 1008 75.1
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1486.1 1008 73.7
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1483.8 1014 74.8
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1479.9 1004 75.0
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1010 74.4
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1473.0 1006 74.7
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1470.7 1013 74.4
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1469.9 1008 74.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1469.1 1011 74.8
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1466.1 999 74.7
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1464.9 1011 74.2
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1464.1 1010 73.4
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1457.6 1016 73.5
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1455.7 1017 73.9
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1454.9 1008 73.4
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1453.3 1033 71.4
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1452.6 965 76.8
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1452.2 1010 74.0
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1451.0 1008 73.3
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1449.9 1026 71.7
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1448.7 1015 73.2
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1447.6 1012 73.3
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1447.2 1033 71.2
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1445.6 1024 72.2
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1441.4 1043 70.4
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1440.6 1010 72.0
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1439.5 1013 72.2
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1009 72.6
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1435.6 1023 71.3
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1434.9 1007 73.3
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1433.3 1020 71.6
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1432.2 1020 71.5
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1431.0 1021 71.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1428.3 1031 70.8
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 1011 72.6
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1424.5 1024 70.9
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1419.4 1002 72.0
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1412.1 1001 71.8
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1411.0 1012 70.8
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1063 68.9
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1005 71.4
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1406.0 969 74.8
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1405.2 1083 68.1
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1404.4 1005 71.7
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1399.0 1004 71.3
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1396.7 1011 70.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1395.9 1011 70.1
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1394.8 1010 70.1
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1393.6 1015 70.3
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1387.1 1010 70.0
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1386.7 1010 70.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1386.7 1012 69.7
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1385.9 1002 70.7
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 1010 69.9
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 1010 69.9
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1384.4 1016 69.2
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1384.0 1026 70.3
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1383.6 1023 69.0
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1383.6 1010 70.7
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1381.7 1016 69.5
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1379.4 1017 69.0
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1378.6 1019 69.3
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1377.8 1017 70.2
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1377.5 1036 68.6
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1372.5 1020 68.6
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1368.2 979 71.1
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1367.1 931 75.7
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1359.0 1009 67.9
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 1018 67.5
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1356.7 1017 68.7
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1344.3 1006 69.1
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1335.1 1018 66.8
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1329.7 1019 67.7
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1322.4 998 68.9
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1317.4 994 68.8
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1315.4 1017 66.8
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1310.8 1005 66.6
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1307.0 975 68.3
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1306.6 1004 67.3
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1297.0 1011 65.3
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1293.5 988 67.9
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1281.2 998 65.8
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1270.4 1029 64.7
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1269.2 1043 63.3
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1269.2 1012 64.9
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1268.8 1031 64.4
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1263.8 1010 64.8
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1253.4 962 66.6
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1236.1 1150 57.8
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1234.2 1024 63.6
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1231.9 941 67.9
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1228.4 1004 63.4
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1221.1 1182 56.3
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1218.4 1042 62.6
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1208.7 1004 61.8
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1206.0 1039 60.8
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1204.5 1005 63.9
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1199.9 1012 62.9
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1194.1 1011 60.9
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1173.7 858 70.9
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1172.5 1012 60.0
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1169.1 929 65.9
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1168.7 1017 61.9
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1145.2 983 63.5
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1139.4 898 65.7
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1135.2 1019 60.4
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1103.6 928 60.8
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1081.6 808 70.2
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.6e-306 1056.2 872 64.0
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 7.0e-299 1030.8 943 59.8
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 8.0e-279 964.1 868 59.1
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.5e-269 933.3 1024 50.6
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 4.4e-269 931.8 782 63.7
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.4e-261 905.6 1035 49.3
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.6e-250 870.2 630 71.3
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.0e-249 867.5 626 71.1
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.6e-248 861.7 977 48.8
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.0e-236 824.3 643 68.6
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.9e-236 822.8 1020 45.7
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.3e-233 813.9 1019 45.6
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 4.6e-226 788.9 1233 40.6
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.9e-224 783.5 617 65.6
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 5.5e-219 765.4 867 46.9
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 1.1e-182 644.8 389 82.0
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.7e-175 620.9 344 88.7
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.7e-157 560.5 389 74.3
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.7e-151 541.2 567 51.5
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 3.0e-148 530.4 444 64.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 3.9e-148 530.0 467 63.4
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 4.0e-137 493.4 540 51.7
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 2.5e-102 377.9 237 81.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-102 377.9 279 69.9
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.6e-101 375.2 205 83.9
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 8.8e-100 369.4 255 74.9
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 4.2e-86 323.9 242 69.4
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.4e-81 308.1 821 31.2
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 7.7e-80 303.1 257 64.6
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 2.5e-78 298.1 152 92.1
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.5e-72 277.7 150 84.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 5.2e-60 237.3 226 55.3
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 8.0e-53 213.4 168 69.0
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 2.6e-51 208.4 256 51.2
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 3.2e-49 201.4 114 78.9
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.3e-46 190.3 475 30.5
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.2e-45 189.5 147 74.8
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 4.1e-41 174.5 151 59.6
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.8e-40 170.2 90 80.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.8e-36 159.1 218 46.3
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 7.1e-33 147.1 137 62.8
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.5e-30 138.7 88 70.5
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 7.3e-30 137.1 129 56.6
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 7.3e-30 137.1 77 80.5
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.6e-27 128.6 100 69.0
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.6e-24 119.4 80 73.8
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-22 112.1 96 57.3
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 3.2e-17 95.1 98 52.0
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 3.2e-17 95.1 98 52.0
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 7.1e-17 94.0 83 59.0
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.3e-15 89.0 126 47.6
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.1e-12 80.1 64 57.8
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 4.5e-11 74.7 51 66.7
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 5.8e-11 74.3 46 76.1
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 9.3e-09 67.0 65 52.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.7e-08 65.5 80 50.0


User provided reference genes

Program Settings