Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 4974.8 2543 100.0
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 4444.4 2544 89.6
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 3745.7 2032 94.2
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3585.0 2552 72.6
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3571.9 2549 71.8
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3561.9 2558 71.9
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3534.2 2546 71.3
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3530.7 2554 71.1
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3529.6 2549 71.7
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3517.2 2549 71.4
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3508.0 2555 71.2
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3506.1 2578 70.8
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3497.2 2576 70.7
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3493.0 2545 71.0
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3489.9 2546 71.2
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3486.0 2553 70.3
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3481.4 2554 70.6
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3481.0 2547 70.3
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3472.2 2557 70.6
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3450.6 2549 70.2
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3447.5 2545 70.0
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3416.3 2546 69.9
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3411.7 2545 69.5
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3409.0 2544 69.7
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3407.8 2551 69.3
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3392.4 2587 68.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3380.9 2551 68.5
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3378.2 2544 68.8
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3374.3 2561 68.4
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3362.0 2603 67.9
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3361.6 2543 68.3
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3356.2 2540 68.2
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3340.4 2545 68.0
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3334.7 2548 68.4
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3279.6 2551 67.5
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3269.9 2548 66.7
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3229.1 2559 66.0
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3200.2 2546 65.6
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3192.1 2547 65.4
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3179.0 2557 64.8
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3154.0 2874 60.2
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3152.5 2233 72.5
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3132.0 2563 64.2
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3129.3 2553 63.8
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3126.3 2549 64.7
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3110.5 2553 64.8
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3106.2 2555 64.3
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3105.9 2556 64.5
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3102.4 2558 64.3
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3095.4 2557 64.0
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3086.2 2568 63.5
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3069.3 2569 63.2
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3066.9 2601 63.4
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3051.2 2548 62.7
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3047.7 2581 63.1
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3034.2 2356 67.2
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3022.3 2546 63.3
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3022.3 2546 63.2
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3009.2 2579 62.5
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3000.3 2578 62.5
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2944.1 2555 61.8
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2931.0 2089 72.1
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2924.4 2576 61.3
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2924.0 2555 60.9
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2907.9 2555 61.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2907.9 2417 63.9
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2897.5 2554 60.8
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2876.3 2239 67.2
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2819.3 1889 76.4
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2753.8 2630 57.8
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2747.2 1875 74.7
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2614.3 1734 76.7
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2546.5 1645 78.4
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2351.2 1845 67.2
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2286.5 2340 53.5
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2212.6 1745 66.2
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2162.9 1775 64.6
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2157.5 1733 66.0
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2046.9 2703 45.1
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2016.5 1696 62.6
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2007.6 2780 43.7
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1681.8 1100 78.7
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1665.6 2581 41.1
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1661.7 1422 63.4
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1654.8 1147 73.8
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1652.5 1178 72.5
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1637.1 1186 70.2
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1531.9 1154 70.1
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1509.6 1145 69.8
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1489.2 2517 38.4
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1438.3 2674 36.0
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1380.9 1502 52.1
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1373.6 1634 48.2
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1361.3 1189 61.4
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1360.5 855 79.8
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1354.0 1172 62.3
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1223.4 1491 48.3
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1218.4 902 68.0
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1214.9 745 81.1
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 0.0e+00 1168.7 675 89.3
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 4.3e-292 1009.6 610 84.9
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.4e-287 993.8 673 75.0
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 3.9e-261 906.7 1132 46.4
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 5.8e-257 892.9 1050 49.9
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 8.1e-251 872.5 639 70.7
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.4e-239 834.3 1040 47.5
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 3.2e-239 833.9 915 52.1
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 8.8e-213 746.1 913 47.6
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 4.0e-197 694.1 496 70.6
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.0e-192 677.2 844 49.5
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 5.0e-192 677.2 741 52.0
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.8e-179 634.8 892 44.3
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.9e-176 624.8 614 59.9
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.8e-173 615.5 672 50.6
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.4e-171 607.1 386 76.7
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.7e-163 582.4 670 48.5
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.9e-159 568.9 489 60.5
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 2.9e-147 528.5 491 58.0
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.6e-142 511.5 545 51.7
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 8.4e-131 473.8 498 54.8
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 1.2e-113 416.8 476 46.8
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 3.3e-111 408.7 266 75.2
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.5e-107 394.4 240 86.2
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.4e-104 386.7 518 44.2
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.0e-91 341.7 180 90.0
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.3e-87 328.9 204 83.3
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 7.7e-84 317.8 180 82.8
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 6.5e-83 314.7 346 48.8
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 4.8e-78 298.5 228 64.9
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 3.1e-77 295.8 219 67.1
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 2.2e-75 289.7 151 94.0
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 2.9e-75 289.3 203 69.5
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 6.5e-75 288.1 315 52.1
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.0e-71 276.6 158 82.3
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 2.1e-65 256.5 232 59.1
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 3.5e-52 212.6 314 42.0
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 6.0e-52 211.8 316 40.8
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 5.0e-51 208.8 314 41.1
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.1e-49 203.4 339 38.1
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 2.9e-46 193.0 255 45.1
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 3.7e-46 192.6 317 41.6
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 6.4e-46 191.8 1284 24.8
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 5.8e-39 168.7 105 78.1
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 9.9e-39 167.9 116 73.3
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 8.6e-35 154.8 116 74.1
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 2.7e-28 133.3 141 48.9
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.7e-28 133.3 143 51.7
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 1.0e-27 131.3 86 76.7
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.9e-26 127.1 101 71.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.9e-26 127.1 101 71.3
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 1.1e-24 121.3 139 51.8
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 7.6e-23 115.2 120 49.2
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 4.8e-17 95.9 96 54.2
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 6.2e-17 95.5 120 50.8
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 2.4e-16 93.6 182 36.8
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 2.4e-16 93.6 75 64.0
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.9e-16 92.0 129 50.4
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.5e-15 90.9 88 55.7
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.7e-14 87.4 120 50.8
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 1.7e-14 87.4 45 93.3
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.2e-14 87.0 60 71.7
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 6.4e-14 85.5 67 64.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 6.4e-14 85.5 67 64.2
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 8.4e-14 85.1 57 75.4
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.9e-13 84.0 76 53.9
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 7.1e-13 82.0 61 70.5
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 2.1e-12 80.5 288 31.2
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.8e-11 77.4 74 59.5
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.7e-11 75.1 66 66.7
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 2.8e-09 70.1 72 52.8
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 6.2e-09 68.9 52 67.3
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 1.1e-08 68.2 139 33.8
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 2.4e-08 67.0 138 35.5
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 1.5e-07 64.3 104 43.3
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.0e-06 61.6 47 57.4
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.9e-06 60.1 49 63.3
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.5e-06 58.9 47 61.7


User provided reference genes

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