Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 2.0e-124 449.1 224 100.0
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 3.1e-106 388.7 205 93.7
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 6.3e-91 337.8 224 81.2
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 1.6e-89 333.2 217 79.7
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 1.2e-78 297.0 188 76.6
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 3.6e-78 295.4 177 79.7
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 1.4e-77 293.5 180 80.6
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 1.8e-77 293.1 180 78.9
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 2.3e-77 292.7 181 76.8
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 4.0e-77 292.0 181 76.8
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.2e-76 290.4 181 76.2
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 1.5e-76 290.0 181 76.8
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 2.6e-76 289.3 195 75.4
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 9.8e-76 287.3 183 74.9
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 2.2e-75 286.2 179 77.7
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 3.7e-75 285.4 199 69.8
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 3.7e-75 285.4 203 72.9
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 6.4e-75 284.6 179 77.1
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 6.4e-75 284.6 190 73.2
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 8.3e-75 284.3 186 73.7
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 1.4e-74 283.5 188 74.5
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 2.4e-74 282.7 187 73.8
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 3.2e-74 282.3 203 71.9
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 4.1e-74 282.0 219 66.7
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 4.1e-74 282.0 182 74.2
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 5.4e-74 281.6 176 75.6
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 5.4e-74 281.6 203 72.4
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 5.4e-74 281.6 194 72.2
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 7.0e-74 281.2 178 74.2
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 7.0e-74 281.2 190 73.2
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 9.2e-74 280.8 183 76.0
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 2.0e-73 279.6 204 69.6
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 2.0e-73 279.6 176 75.0
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 2.0e-73 279.6 183 71.6
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 2.0e-73 279.6 177 75.7
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 4.6e-73 278.5 183 71.6
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 6.0e-73 278.1 216 66.2
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 7.8e-73 277.7 173 76.3
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 1.3e-72 276.9 221 64.7
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 5.0e-72 275.0 181 72.9
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 6.6e-72 274.6 181 72.9
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 6.6e-72 274.6 190 70.0
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 8.6e-72 274.2 177 74.0
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 1.1e-71 273.9 195 68.2
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 1.1e-71 273.9 228 62.7
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 1.5e-71 273.5 172 73.8
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 3.3e-71 272.3 174 74.7
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 5.6e-71 271.6 229 63.3
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 5.6e-71 271.6 180 71.1
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 1.6e-70 270.0 176 73.3
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 1.6e-70 270.0 178 71.3
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 1.1e-69 267.3 180 67.8
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 1.8e-69 266.5 176 71.0
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 3.1e-69 265.8 174 71.3
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 5.2e-69 265.0 214 62.1
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 6.8e-69 264.6 188 70.2
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 1.2e-68 263.8 171 71.9
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 9.8e-68 260.8 207 64.3
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 2.9e-67 259.2 185 67.0
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 4.9e-67 258.5 175 70.9
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 4.9e-67 258.5 176 70.5
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 8.3e-67 257.7 199 63.8
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 1.4e-66 256.9 223 60.5
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 1.4e-66 256.9 223 60.5
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 5.4e-66 255.0 173 71.1
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 5.4e-66 255.0 175 70.9
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 7.1e-66 254.6 215 60.0
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 9.2e-66 254.2 173 69.9
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 2.1e-65 253.1 207 63.3
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 2.1e-65 253.1 173 70.5
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 3.5e-65 252.3 210 61.4
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 4.6e-65 251.9 208 61.1
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 4.6e-65 251.9 208 61.1
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 4.6e-65 251.9 200 65.0
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 6.0e-65 251.5 203 63.5
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 6.0e-65 251.5 203 63.5
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 2.3e-64 249.6 222 58.6
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 5.1e-64 248.4 177 65.5
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 5.1e-64 248.4 179 65.9
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 1.1e-63 247.3 170 71.2
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 1.9e-63 246.5 209 61.2
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 9.5e-63 244.2 185 66.5
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 9.5e-63 244.2 209 58.4
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 6.2e-62 241.5 183 67.8
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 8.1e-62 241.1 185 65.9
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 8.9e-61 237.7 162 72.2
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 2.0e-60 236.5 146 79.5
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 9.9e-60 234.2 144 77.1
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 6.4e-59 231.5 175 65.7
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 2.7e-57 226.1 178 64.0
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 2.7e-57 226.1 149 74.5
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 1.1e-53 214.2 133 77.4
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 3.1e-53 212.6 136 73.5
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 1.2e-52 210.7 183 59.6
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 5.8e-52 208.4 206 58.3
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 9.3e-50 201.1 171 59.1
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 3.5e-49 199.1 158 64.6
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 3.5e-49 199.1 143 68.5
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 3.3e-47 192.6 197 54.3
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 2.4e-45 186.4 165 52.7
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 5.3e-45 185.3 124 72.6
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 5.3e-45 185.3 148 61.5
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 3.4e-44 182.6 167 52.1
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 9.9e-44 181.0 161 59.6
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 2.9e-43 179.5 180 50.6
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 9.3e-42 174.5 181 49.7
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 1.7e-40 170.2 180 50.0
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 1.7e-35 153.7 132 56.1
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 6.4e-35 151.8 94 72.3
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 3.2e-34 149.4 107 70.1
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 3.5e-33 146.0 105 65.7
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 5.6e-31 138.7 119 60.5
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 2.8e-30 136.3 127 57.5
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 5.3e-29 132.1 85 75.3
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 3.5e-25 119.4 88 65.9
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 3.0e-24 116.3 126 47.6
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 1.9e-23 113.6 120 49.2
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 1.1e-21 107.8 119 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 1.4e-21 107.5 159 42.1
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 5.3e-21 105.5 63 73.0
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 7.6e-20 101.7 70 75.7
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 5.7e-15 85.5 99 50.5
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 1.2e-12 77.8 54 68.5
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 2.6e-12 76.6 237 24.9
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 2.2e-11 73.6 69 59.4
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 7.2e-10 68.6 42 76.2
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 3.0e-08 63.2 45 62.2
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 3.9e-08 62.8 39 79.5
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 1.5e-07 60.8 48 64.6
PRCOL_00005216 Prasinoderma coloniale HOM05D006215 ORTHO05D007719 4.8e-06 55.8 190 33.2


User provided reference genes

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