Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 4.1e-125 451.4 232 100.0
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 6.5e-107 391.0 233 88.4
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 7.7e-100 367.5 231 81.8
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.6e-92 343.2 186 92.5
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 4.6e-84 315.1 248 68.5
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.1e-77 293.9 229 67.2
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 4.1e-77 292.0 227 65.6
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 2.5e-74 282.7 229 65.1
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 3.3e-74 282.3 230 64.8
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 7.3e-74 281.2 230 60.4
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 7.3e-74 281.2 197 69.0
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 7.3e-74 281.2 227 62.6
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 4.7e-73 278.5 229 62.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.1e-72 277.3 228 62.3
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.1e-72 277.3 231 62.3
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.0e-72 275.4 237 59.5
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 8.9e-72 274.2 230 59.1
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 4.4e-71 271.9 227 62.6
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 4.4e-71 271.9 227 62.6
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 4.4e-71 271.9 227 62.6
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.9e-71 270.8 227 62.1
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 9.9e-71 270.8 226 60.6
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.3e-70 270.4 224 60.3
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 1.7e-70 270.0 186 71.0
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 2.2e-70 269.6 227 62.1
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.9e-70 269.2 226 60.6
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 6.4e-70 268.1 228 61.0
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 6.4e-70 268.1 226 60.6
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 6.4e-70 268.1 228 61.4
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.9e-69 266.5 227 63.4
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.9e-69 266.5 228 61.0
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 2.4e-69 266.2 227 59.9
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.2e-69 265.8 197 66.0
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.1e-69 265.4 197 65.5
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.2e-68 263.8 228 61.0
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.7e-68 262.7 197 66.5
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.7e-68 262.7 197 66.5
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.8e-68 261.2 226 57.1
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 7.8e-68 261.2 231 58.9
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 2.3e-67 259.6 228 59.2
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 5.1e-67 258.5 233 58.8
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.1e-66 257.3 226 58.4
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.1e-66 257.3 226 57.1
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.5e-66 256.9 229 58.1
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.3e-66 255.8 226 54.9
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 4.3e-66 255.4 227 57.3
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 5.6e-66 255.0 234 56.0
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 5.6e-66 255.0 226 55.3
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 7.3e-66 254.6 231 58.4
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.1e-65 253.1 236 57.6
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 3.6e-65 252.3 229 57.6
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.6e-65 252.3 226 54.9
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 1.4e-64 250.4 233 56.7
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 4.0e-64 248.8 228 57.5
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 8.9e-64 247.7 229 53.3
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 3.4e-63 245.7 231 56.7
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 4.4e-63 245.4 226 55.3
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 5.8e-63 245.0 194 63.9
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 9.9e-63 244.2 226 56.6
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 9.9e-63 244.2 227 52.4
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.7e-62 243.4 229 55.5
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.7e-62 243.4 196 58.2
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 2.2e-62 243.0 195 60.5
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 3.8e-62 242.3 229 55.5
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 8.4e-62 241.1 191 64.9
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.4e-61 240.4 229 56.3
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 5.4e-61 238.4 182 62.1
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 7.1e-61 238.0 184 63.6
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 9.2e-61 237.7 227 52.9
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.6e-60 236.9 198 61.6
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.6e-60 236.9 194 58.2
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 2.7e-60 236.1 194 57.7
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 3.5e-60 235.7 229 52.0
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 4.6e-60 235.3 192 60.4
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 4.6e-60 235.3 229 52.0
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 4.6e-60 235.3 246 52.4
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 7.8e-60 234.6 194 56.7
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 1.0e-59 234.2 229 50.7
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 3.9e-59 232.3 194 55.7
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 3.9e-59 232.3 228 55.7
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 3.9e-59 232.3 182 58.8
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 6.6e-59 231.5 227 55.1
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 6.6e-59 231.5 228 55.7
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.1e-58 230.7 182 58.2
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.1e-58 230.7 182 58.2
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.9e-58 229.9 182 58.2
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.9e-58 229.9 182 58.2
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.9e-58 229.9 195 62.6
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 2.5e-58 229.6 185 59.5
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 2.5e-58 229.6 196 57.7
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 3.3e-58 229.2 182 57.7
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 3.3e-58 229.2 192 63.5
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 4.3e-58 228.8 227 49.8
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 5.6e-58 228.4 227 49.8
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 5.6e-58 228.4 233 50.6
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.6e-57 226.9 247 49.4
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.6e-57 226.9 234 53.4
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.1e-57 226.5 247 49.4
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 4.7e-57 225.3 227 49.8
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 8.1e-57 224.6 247 49.0
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.1e-56 224.2 245 48.2
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 2.4e-56 223.0 226 52.7
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 3.1e-56 222.6 232 49.1
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 6.9e-56 221.5 204 54.4
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.5e-55 220.3 196 54.1
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 2.0e-55 219.9 206 54.4
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.6e-55 219.5 265 46.8
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.2e-54 216.5 250 53.2
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 6.4e-54 214.9 202 52.5
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 2.4e-53 213.0 152 67.1
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.4e-53 213.0 261 44.4
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.2e-53 212.2 186 56.5
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 5.4e-53 211.8 202 51.5
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.1e-51 205.3 142 68.3
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.1e-49 199.9 183 54.1
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.1e-48 197.6 183 53.0
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 9.0e-48 194.5 207 51.2
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.1e-45 187.6 162 56.8
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.4e-45 187.2 158 58.2
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 7.1e-45 184.9 230 42.6
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 2.3e-43 179.9 138 63.8
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 1.1e-42 177.6 231 44.6
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.5e-42 176.4 149 59.7
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 4.3e-42 175.6 231 45.5
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 4.3e-42 175.6 192 48.4
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 5.6e-42 175.3 208 51.0
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 4.6e-36 155.6 253 36.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.3e-35 154.1 154 49.4
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 6.7e-35 151.8 131 58.0
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.1e-34 151.0 199 43.2
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 8.2e-33 144.8 184 42.4
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.6e-28 130.6 230 37.4
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.0e-27 127.9 178 41.0
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.8e-27 127.1 183 39.3
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 3.9e-27 125.9 184 38.0
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 5.9e-23 112.1 116 49.1
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.9e-22 109.8 76 71.1
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.3e-19 100.1 88 58.0
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 4.1e-16 89.4 95 46.3
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.3e-14 84.3 72 51.4
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 3.0e-11 73.2 139 32.4
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 8.8e-11 71.6 51 78.4
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 9.7e-10 68.2 176 27.8
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.3e-06 57.8 81 40.7
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.3e-06 57.8 81 39.5
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 2.2e-06 57.0 35 77.1


User provided reference genes

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