Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 6.2e-67 257.3 128 100.0
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 7.4e-60 233.8 128 90.6
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 4.0e-58 228.0 128 88.3
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 5.3e-58 227.6 127 88.2
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 6.9e-58 227.3 127 85.8
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 6.9e-58 227.3 127 85.8
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.2e-57 226.5 127 87.4
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 1.5e-57 226.1 119 93.3
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 1.5e-57 226.1 127 87.4
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.0e-57 225.7 127 87.4
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 2.0e-57 225.7 127 85.0
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 3.4e-57 224.9 127 87.4
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 3.4e-57 224.9 127 85.8
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 4.5e-57 224.6 119 93.3
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 7.6e-57 223.8 127 84.3
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 2.2e-56 222.2 127 85.8
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 3.8e-56 221.5 127 85.0
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 3.8e-56 221.5 127 85.0
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 6.5e-56 220.7 127 84.3
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 6.5e-56 220.7 124 86.3
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 6.5e-56 220.7 127 82.7
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 6.5e-56 220.7 127 85.0
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 8.4e-56 220.3 127 82.7
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.1e-55 219.9 127 84.3
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 1.4e-55 219.5 127 85.0
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 1.4e-55 219.5 127 85.0
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 1.9e-55 219.2 127 84.3
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.9e-55 219.2 127 85.0
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.9e-55 219.2 127 85.8
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 1.9e-55 219.2 127 85.0
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.2e-55 218.4 127 82.7
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 4.2e-55 218.0 127 83.5
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 4.2e-55 218.0 127 83.5
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 7.1e-55 217.2 127 81.1
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 7.1e-55 217.2 127 84.3
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 7.1e-55 217.2 127 84.3
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 1.2e-54 216.5 127 82.7
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.2e-54 216.5 127 82.7
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 3.5e-54 214.9 127 83.5
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 6.0e-54 214.2 127 82.7
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 6.0e-54 214.2 126 82.5
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 7.9e-54 213.8 127 81.9
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 7.9e-54 213.8 119 88.2
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.8e-53 212.6 127 81.9
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 2.3e-53 212.2 127 80.3
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.0e-53 211.8 127 80.3
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 3.9e-53 211.5 123 83.7
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 5.1e-53 211.1 119 84.0
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 6.7e-53 210.7 128 79.7
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 8.7e-53 210.3 119 84.9
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 8.7e-53 210.3 127 79.5
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 1.5e-52 209.5 128 78.9
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 1.5e-52 209.5 119 83.2
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 2.5e-52 208.8 127 79.5
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 2.5e-52 208.8 127 79.5
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 2.5e-52 208.8 127 79.5
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.5e-52 208.8 121 83.5
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 3.3e-52 208.4 128 79.7
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 4.3e-52 208.0 128 79.7
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 4.3e-52 208.0 127 78.7
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 4.3e-52 208.0 119 84.9
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 7.4e-52 207.2 120 85.0
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 7.4e-52 207.2 127 77.2
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 9.6e-52 206.8 119 85.7
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 9.6e-52 206.8 127 78.0
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 1.3e-51 206.5 127 78.0
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.3e-51 206.5 119 83.2
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 1.6e-51 206.1 128 78.1
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 1.6e-51 206.1 127 78.7
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 2.8e-51 205.3 119 83.2
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 2.8e-51 205.3 127 80.3
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.8e-51 205.3 119 85.7
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 2.8e-51 205.3 127 78.7
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 4.8e-51 204.5 117 82.9
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 4.8e-51 204.5 119 85.7
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 6.2e-51 204.1 128 78.1
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 6.2e-51 204.1 127 78.7
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 8.2e-51 203.8 119 83.2
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 81.5
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 1.1e-50 203.4 127 78.0
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 1.1e-50 203.4 127 78.0
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 81.5
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 1.4e-50 203.0 127 78.7
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 1.8e-50 202.6 127 76.4
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 1.8e-50 202.6 127 77.2
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 3.1e-50 201.8 128 77.3
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 3.1e-50 201.8 127 76.4
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 4.1e-50 201.4 122 79.5
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 5.3e-50 201.1 127 78.0
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 6.9e-50 200.7 119 81.5
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.5e-49 199.5 119 80.7
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.4e-49 198.4 119 79.8
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 3.4e-49 198.4 127 78.0
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 4.5e-49 198.0 127 77.2
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 1.3e-48 196.4 127 73.2
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 1.3e-48 196.4 128 77.3
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 2.2e-48 195.7 121 78.5
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 2.2e-48 195.7 121 78.5
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 2.2e-48 195.7 127 77.2
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 6.5e-48 194.1 127 75.6
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 6.5e-48 194.1 119 80.7
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 2.5e-47 192.2 126 75.4
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 4.2e-47 191.4 119 79.8
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 5.5e-47 191.0 119 79.8
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 5.5e-47 191.0 144 66.0
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 6.1e-46 187.6 127 72.4
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 6.1e-46 187.6 119 73.9
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 6.1e-46 187.6 127 72.4
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.3e-45 185.7 117 75.2
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 3.9e-45 184.9 119 75.6
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 7.4e-44 180.6 130 71.5
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 7.4e-44 180.6 126 73.8
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.2e-43 179.1 122 71.3
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 2.2e-43 179.1 119 71.4
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.8e-42 176.0 130 69.2
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 4.1e-42 174.9 105 78.1
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 5.3e-42 174.5 105 80.0
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.2e-41 173.3 121 71.1
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.6e-41 172.2 103 78.6
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 7.2e-39 164.1 133 68.4
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 2.3e-37 159.1 94 79.8
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 3.9e-37 158.3 97 79.4
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 6.7e-37 157.5 93 79.6
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 8.8e-37 157.1 95 77.9
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-36 156.8 94 78.7
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 4.1e-34 148.3 100 74.0
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 5.3e-34 147.9 112 62.5
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 3.8e-32 141.7 113 56.6
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 1.9e-31 139.4 141 51.8
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 2.3e-29 132.5 139 49.6
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 2.0e-28 129.4 92 72.8
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 2.0e-28 129.4 85 72.9
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 5.7e-28 127.9 113 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 9.7e-28 127.1 99 56.6
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 3.6e-14 82.0 51 78.4
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.0e-08 61.6 39 69.2
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.5e-07 59.3 39 71.8
Sed0016125 Sechium edule HOM05D005344 ORTHO05D006444 5.5e-07 58.2 31 83.9
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 1.2e-06 57.0 31 83.9
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 1.6e-06 56.6 50 50.0


User provided reference genes

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