Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 0.0e+00 1363.2 809 100.0
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 0.0e+00 1252.3 810 88.3
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 0.0e+00 1123.6 819 81.7
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 8.8e-268 927.2 810 71.7
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 6.2e-221 771.5 677 70.2
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 9.8e-142 508.4 714 49.7
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.9e-137 494.2 743 48.0
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 1.5e-134 484.6 862 44.5
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 1.1e-127 461.8 686 46.5
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 6.4e-125 452.6 834 40.0
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 4.7e-120 436.4 821 40.8
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 1.2e-118 431.8 700 45.0
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 1.4e-116 424.9 711 43.3
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 7.8e-115 419.1 851 39.2
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 3.0e-114 417.2 730 44.2
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 3.9e-114 416.8 825 39.9
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.5e-113 414.8 608 45.7
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 2.8e-112 410.6 823 40.8
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 4.7e-112 409.8 851 39.1
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 8.1e-112 409.1 745 43.1
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 4.4e-110 403.3 859 39.8
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 2.2e-109 401.0 762 41.3
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 4.2e-108 396.7 665 43.0
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 5.4e-108 396.4 834 39.2
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 1.0e-106 392.1 662 42.4
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 1.7e-106 391.3 861 38.6
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 6.6e-106 389.4 735 42.2
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 5.6e-105 386.3 810 39.3
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 4.7e-104 383.3 832 38.6
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 4.7e-104 383.3 828 39.4
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 6.2e-104 382.9 707 42.0
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 6.2e-104 382.9 820 38.5
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 6.2e-104 382.9 855 39.3
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 2.0e-102 377.9 831 38.6
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 9.9e-102 375.6 821 39.1
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 3.8e-101 373.6 672 41.2
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 4.2e-100 370.2 822 38.8
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 9.3e-100 369.0 588 45.1
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 3.9e-98 363.6 841 37.5
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 1.5e-97 361.7 656 41.9
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 7.3e-97 359.4 609 42.7
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.3e-96 358.6 861 37.4
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 4.8e-96 356.7 707 40.6
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 4.8e-96 356.7 843 37.8
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 5.8e-94 349.7 803 39.7
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 5.8e-94 349.7 861 36.2
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 9.9e-94 349.0 672 40.5
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 1.9e-92 344.7 788 37.8
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 3.2e-92 344.0 669 40.7
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 7.1e-92 342.8 828 37.4
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 7.1e-92 342.8 629 42.4
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 3.5e-91 340.5 837 36.7
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 7.9e-91 339.3 818 39.0
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 1.3e-90 338.6 717 39.5
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 2.3e-90 337.8 706 39.7
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 8.7e-90 335.9 661 42.2
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 8.7e-90 335.9 724 40.7
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 3.3e-89 334.0 821 39.3
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 1.3e-85 322.0 546 42.7
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 1.1e-84 318.9 698 37.8
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 9.3e-84 315.8 631 40.3
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.2e-83 315.5 611 39.8
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 2.5e-81 307.8 752 37.2
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 5.7e-81 306.6 662 38.5
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.3e-80 305.4 595 40.8
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 4.8e-80 303.5 652 39.7
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 8.2e-80 302.8 606 39.1
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 8.2e-80 302.8 599 41.1
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 2.4e-79 301.2 681 38.5
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 2.6e-78 297.7 673 38.2
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 1.3e-77 295.4 683 38.5
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 2.5e-76 291.2 805 35.7
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 1.2e-75 288.9 655 38.0
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 1.8e-74 285.0 723 37.6
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 1.5e-70 271.9 708 35.5
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 5.0e-69 266.9 590 36.9
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 5.0e-69 266.9 590 36.9
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 9.4e-68 262.7 610 36.9
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 6.7e-66 256.5 554 41.2
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 1.1e-65 255.8 661 35.4
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 7.4e-65 253.1 319 51.1
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 1.4e-63 248.8 674 35.8
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 3.4e-62 244.2 523 38.0
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 1.0e-61 242.7 672 35.7
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 6.5e-61 240.0 710 33.4
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 1.2e-59 235.7 691 34.6
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 3.6e-59 234.2 690 33.6
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 1.3e-56 225.7 679 32.7
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 1.7e-56 225.3 734 35.7
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 2.8e-56 224.6 680 34.3
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 1.4e-55 222.2 672 33.0
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 1.4e-55 222.2 682 33.3
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 2.4e-55 221.5 680 33.4
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 2.4e-55 221.5 680 33.4
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 3.1e-55 221.1 663 33.2
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 2.6e-54 218.0 599 34.1
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 2.2e-53 214.9 692 34.0
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 2.2e-53 214.9 687 32.8
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 2.5e-52 211.5 569 34.8
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.8e-45 187.6 462 33.1
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 5.0e-45 187.2 675 30.8
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 2.0e-38 165.2 632 29.3
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 5.0e-37 160.6 561 36.7
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.0e-34 152.9 655 28.1
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 2.6e-33 148.3 609 28.4
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 1.6e-30 139.0 605 29.4
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 3.3e-28 131.3 451 31.0
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 8.0e-27 126.7 413 31.0
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.7e-24 117.9 765 25.6
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 3.7e-24 117.9 765 25.6
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 5.6e-20 104.0 715 25.9
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 6.8e-18 97.1 197 40.1
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 9.8e-17 93.2 174 42.5
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 1.4e-10 72.8 171 36.8
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 2.3e-10 72.0 151 39.7
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 1.1e-07 63.2 166 32.5
AagrBONN_evm.TU.Sc2ySwM_362.1405 Anthoceros agrestis HOM05D051179 ORTHO05D038399 7.8e-06 57.0 51 60.8


User provided reference genes

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