Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1356.3 650 100.0
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1339.7 650 98.5
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1304.3 643 96.6
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1283.1 650 92.8
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1142.5 652 81.1
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1137.9 651 80.3
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1136.3 691 78.6
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1134.4 651 80.0
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1132.9 651 79.7
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1132.1 651 80.6
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1130.9 651 80.6
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1129.0 651 79.7
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1128.6 642 81.5
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1128.2 650 80.5
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1126.3 648 79.8
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1125.2 652 80.8
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1124.4 646 81.3
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1122.5 650 79.8
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1121.3 649 80.3
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1120.5 651 79.7
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1119.8 651 80.5
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1118.6 640 80.9
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1118.6 650 79.7
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1117.4 651 78.6
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1115.1 639 80.6
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1114.8 652 79.0
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1111.3 651 79.1
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1109.7 651 79.1
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1107.8 651 79.0
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1104.4 654 78.9
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1102.0 646 78.5
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1100.9 652 79.0
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1099.0 641 79.4
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 0.0e+00 1097.0 669 76.2
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 0.0e+00 1096.3 641 77.7
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1095.5 651 77.6
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1094.7 637 79.7
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1093.2 649 77.3
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1092.4 650 76.3
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1092.4 655 78.2
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1091.6 641 79.1
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1090.5 651 75.9
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1089.3 650 75.4
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 0.0e+00 1085.1 650 77.1
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1082.8 634 81.2
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1080.9 682 74.0
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 0.0e+00 1080.5 805 67.0
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1080.1 644 79.0
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1079.3 651 75.9
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1078.5 662 76.0
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 4.4e-312 1074.7 725 70.6
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 4.4e-312 1074.3 647 77.0
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 4.4e-312 1073.5 651 76.7
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 3.1e-311 1071.2 650 76.8
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 4.0e-311 1070.8 642 76.3
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 6.7e-311 1070.1 653 75.7
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 1.5e-310 1068.9 650 76.5
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 4.4e-310 1067.4 646 75.2
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 3.7e-309 1064.3 638 76.5
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 4.1e-308 1060.8 652 75.5
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 7.0e-308 1060.1 650 74.3
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 1.2e-307 1059.3 656 76.1
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 1.6e-307 1058.9 649 76.3
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 1.0e-306 1056.2 668 72.8
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 1.7e-306 1055.4 649 76.1
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 2.3e-306 1055.0 643 75.3
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 5.6e-305 1050.4 650 73.8
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 5.6e-305 1050.4 636 76.4
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 1.2e-304 1049.3 649 75.5
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 8.0e-304 1046.6 649 75.2
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 3.0e-303 1044.6 636 76.4
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 4.0e-303 1044.3 652 74.7
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 6.8e-303 1043.5 613 78.1
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 2.0e-302 1042.0 594 80.0
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 1.3e-301 1039.3 614 77.7
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.2e-301 1038.5 649 75.0
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 2.9e-301 1038.1 649 75.0
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 2.9e-301 1038.1 649 75.0
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 2.9e-301 1038.1 649 75.0
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 1.4e-300 1035.8 647 74.2
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 9.2e-300 1033.1 597 80.1
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 2.0e-299 1031.9 646 74.0
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 7.8e-299 1030.0 793 63.4
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 1.5e-294 1015.8 646 72.0
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 2.5e-289 998.4 646 72.4
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 1.8e-287 992.3 598 77.6
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 9.2e-284 979.9 644 70.0
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 1.8e-279 965.7 652 71.5
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 1.2e-272 943.0 558 77.6
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 2.8e-272 941.8 643 72.2
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 3.3e-265 918.3 594 71.0
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 9.6e-257 890.2 556 73.9
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 3.2e-252 875.2 575 69.7
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 1.6e-248 862.8 641 63.0
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 6.0e-243 844.3 638 61.9
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 1.7e-237 826.2 640 60.8
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 4.0e-202 708.8 514 66.9
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 1.8e-194 683.3 363 83.2
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 1.2e-171 607.4 371 77.6
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 7.6e-161 571.6 376 70.5
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.2e-160 570.1 387 68.7
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.0e-157 561.2 557 51.9
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 1.6e-147 527.3 532 50.8
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.3e-124 449.9 241 81.7
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 3.1e-82 310.5 740 31.1
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 2.1e-78 297.7 152 84.2
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 4.1e-66 256.9 244 55.7
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 2.8e-54 217.6 194 53.6
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.0e-29 134.0 72 86.1
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 6.9e-29 133.3 73 83.6
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 4.3e-23 114.0 65 76.9
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 9.6e-23 112.8 71 66.2
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.3e-22 112.5 70 68.6
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.4e-21 109.0 101 57.4
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 3.4e-20 104.4 70 64.3
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 8.4e-19 99.8 64 68.8
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 1.9e-18 98.6 95 55.8
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 2.3e-16 91.7 66 68.2
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 2.3e-16 91.7 66 68.2
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 2.3e-16 91.7 66 68.2
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 5.3e-13 80.5 102 44.1
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 9.0e-13 79.7 98 49.0
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.9e-10 72.0 52 57.7
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 3.7e-06 57.8 69 42.0
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 8.2e-06 56.6 76 43.4


User provided reference genes

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