Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 9.6e-164 580.1 292 100.0
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.4e-162 576.2 292 99.3
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.4e-159 566.2 292 97.3
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 4.6e-150 534.6 292 91.1
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 2.0e-145 519.2 293 89.1
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 9.3e-135 483.8 298 82.6
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 7.4e-132 474.2 297 80.5
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 9.0e-130 467.2 295 79.0
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.3e-128 463.4 294 79.9
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 3.8e-128 461.8 298 79.2
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.5e-128 461.1 293 80.5
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 6.5e-128 461.1 293 80.5
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.4e-127 459.9 299 78.9
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.4e-127 459.9 295 79.3
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 2.5e-127 459.1 299 78.9
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 5.5e-127 458.0 292 78.8
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 7.2e-127 457.6 293 79.5
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.2e-126 456.8 293 78.2
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.1e-126 456.1 293 79.9
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.7e-126 455.7 292 79.5
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 2.7e-126 455.7 293 79.2
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.6e-126 455.3 293 79.9
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 4.6e-126 454.9 293 78.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.1e-126 454.5 293 79.9
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 7.9e-126 454.1 294 78.6
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.3e-125 452.6 292 79.1
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 5.1e-125 451.4 292 78.8
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.1e-124 450.3 292 78.8
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 3.3e-124 448.7 293 78.2
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.3e-124 448.7 293 78.2
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 7.4e-124 447.6 292 78.4
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.8e-123 445.7 294 76.5
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 6.3e-123 444.5 299 74.6
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 8.2e-123 444.1 299 74.2
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 8.2e-123 444.1 294 77.2
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.8e-122 443.0 293 77.1
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 2.4e-122 442.6 293 75.8
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.4e-122 442.6 293 76.5
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 3.1e-122 442.2 293 76.5
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 6.9e-122 441.0 287 76.0
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 6.9e-122 441.0 293 75.4
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.2e-121 440.3 292 76.0
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.5e-121 439.9 292 76.0
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-121 439.9 292 75.7
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.4e-121 438.7 292 75.7
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.5e-121 438.3 292 75.7
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.5e-121 438.3 292 75.7
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 7.7e-121 437.6 292 75.7
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 7.7e-121 437.6 295 74.6
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 1.0e-120 437.2 292 75.7
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.3e-120 436.8 295 75.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.7e-120 436.4 290 75.9
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 2.2e-120 436.0 292 75.3
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 2.2e-120 436.0 300 74.7
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 2.9e-120 435.6 292 75.0
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 2.9e-120 435.6 292 75.0
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 2.9e-120 435.6 292 75.0
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 3.8e-120 435.3 292 75.0
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 5.0e-120 434.9 292 75.0
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 5.0e-120 434.9 290 75.5
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 6.5e-120 434.5 290 75.5
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-119 433.7 290 75.2
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.9e-119 433.0 290 75.2
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 2.5e-119 432.6 301 72.1
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.2e-119 432.2 293 75.4
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 5.5e-119 431.4 300 74.7
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 9.4e-119 430.6 290 74.8
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 9.4e-119 430.6 292 75.0
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 7.9e-118 427.6 296 74.7
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.4e-117 426.8 295 72.9
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.4e-117 426.8 294 74.8
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.8e-117 426.4 294 73.5
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.8e-117 426.4 291 74.9
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.3e-117 426.0 294 73.1
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.3e-117 426.0 287 73.9
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 3.0e-117 425.6 290 73.8
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.9e-117 425.2 294 74.8
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 6.7e-117 424.5 293 74.7
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 6.7e-117 424.5 292 74.7
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 8.8e-117 424.1 296 74.3
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.1e-116 423.7 296 74.0
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.1e-116 423.7 296 74.0
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.1e-116 423.7 290 73.8
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.1e-116 423.7 293 74.7
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.5e-116 423.3 296 74.0
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 5.7e-116 421.4 284 75.7
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 7.4e-116 421.0 294 73.1
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 3.7e-115 418.7 296 73.0
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 4.8e-115 418.3 284 75.0
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 8.2e-115 417.5 284 74.6
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 8.2e-115 417.5 287 72.5
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.1e-114 417.2 287 72.5
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.1e-114 417.2 287 72.5
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.4e-114 416.8 294 73.1
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.8e-114 416.4 290 71.7
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.4e-114 416.0 292 72.6
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 3.1e-114 415.6 291 72.9
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.1e-114 415.6 287 73.2
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 4.1e-114 415.2 294 73.8
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 5.3e-114 414.8 294 74.1
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 9.1e-114 414.1 281 75.4
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.5e-113 413.3 290 73.1
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.5e-113 413.3 295 72.2
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 2.0e-113 412.9 294 72.4
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.6e-113 412.5 293 72.4
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 5.9e-113 411.4 292 71.6
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 1.0e-112 410.6 292 71.6
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.3e-112 410.2 287 72.8
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.9e-112 409.1 293 72.7
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.1e-111 407.1 294 72.8
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 3.2e-111 405.6 287 72.1
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 9.4e-111 404.1 290 72.4
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 1.2e-110 403.7 282 73.4
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 3.9e-109 398.7 293 70.0
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.5e-108 396.7 288 72.2
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 7.4e-108 394.4 287 71.1
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 9.7e-108 394.0 285 68.1
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.8e-107 392.5 298 68.5
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 2.8e-107 392.5 298 69.1
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 3.7e-107 392.1 297 67.3
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 4.1e-106 388.7 287 68.3
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 5.3e-106 388.3 297 67.7
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 5.3e-106 388.3 293 69.6
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 7.7e-105 384.4 290 70.0
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 3.8e-104 382.1 293 68.6
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 5.0e-104 381.7 297 68.7
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 7.2e-103 377.9 293 68.6
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.1e-102 376.3 273 70.7
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.0e-101 374.0 297 67.7
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 2.0e-100 369.8 292 63.7
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.7e-99 366.7 302 64.9
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 2.8e-99 365.9 297 67.3
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 8.2e-99 364.4 297 66.7
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.4e-98 363.6 294 66.3
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 1.4e-98 363.6 292 65.4
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 9.1e-98 360.9 291 64.3
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 2.9e-96 355.9 301 63.1
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.1e-95 354.0 301 63.1
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.5e-95 353.6 297 64.0
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 6.1e-94 348.2 306 60.8
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 1.0e-93 347.4 291 64.3
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 9.1e-90 334.3 260 65.4
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 9.5e-87 324.3 245 68.2
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 2.6e-84 316.2 293 59.7
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 6.1e-78 295.0 278 55.8
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.2e-76 290.8 216 71.3
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 5.6e-71 271.9 192 73.4
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 9.5e-71 271.2 266 55.3
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.0e-69 267.7 279 52.3
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 4.7e-62 242.3 269 53.2
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 1.4e-61 240.7 284 51.1
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 1.3e-59 234.2 143 79.7
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 6.0e-57 225.3 280 45.4
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 4.7e-54 215.7 152 72.4
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 2.2e-51 206.8 167 68.3
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 3.9e-48 196.1 128 73.4
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.4e-45 187.6 142 68.3
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 4.8e-30 136.0 111 65.8
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 1.5e-28 131.0 88 75.0
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 1.3e-27 127.9 111 63.1
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 1.7e-27 127.5 102 61.8
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 2.7e-25 120.2 332 29.2
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.9e-23 114.0 101 63.4
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 1.5e-15 87.8 73 60.3
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 2.4e-13 80.5 90 56.7
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 1.5e-12 77.8 74 60.8
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 9.7e-07 58.5 152 30.3
A08p28200 Brassica napus HOM05D005748 ORTHO05D007123 3.7e-06 56.6 135 34.1
BraA08t34751Z Brassica rapa HOM05D005748 ORTHO05D007123 3.7e-06 56.6 135 34.1
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 4.8e-06 56.2 82 43.9
MD16G1097300 Malus domestica HOM05D005748 ORTHO05D007123 6.3e-06 55.8 152 28.9
TWI18G0424 Tripterygium wilfordii HOM05D005748 ORTHO05D007123 8.2e-06 55.5 152 31.6


User provided reference genes

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