Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 3.1e-148 528.5 276 100.0
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 2.8e-141 505.4 276 94.6
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 3.7e-133 478.4 277 87.7
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 1.7e-114 416.4 276 75.0
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 2.7e-107 392.5 277 73.3
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.0e-106 390.6 278 70.9
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 1.1e-105 387.1 277 69.0
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 3.3e-105 385.6 276 69.9
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 7.3e-105 384.4 272 69.1
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 9.5e-105 384.0 272 71.0
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.2e-104 383.6 278 70.9
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.8e-104 382.5 276 68.8
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 4.7e-104 381.7 278 70.5
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 6.2e-104 381.3 272 68.8
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.4e-103 380.2 278 71.2
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 1.8e-103 379.8 277 67.5
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 2.3e-103 379.4 232 79.7
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 3.1e-103 379.0 272 68.8
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.0e-103 378.6 277 67.1
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 6.8e-103 377.9 272 68.4
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 6.8e-103 377.9 272 68.4
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 8.9e-103 377.5 272 70.6
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 1.5e-102 376.7 280 68.6
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.0e-102 376.3 276 67.8
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 2.0e-102 376.3 277 67.1
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 2.0e-102 376.3 277 67.1
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 2.6e-102 375.9 276 66.3
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 3.4e-102 375.6 278 68.3
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 3.4e-102 375.6 272 66.9
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 4.4e-102 375.2 273 68.9
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 4.4e-102 375.2 279 66.3
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 9.8e-102 374.0 279 68.1
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 1.7e-101 373.2 278 66.5
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 3.7e-101 372.1 279 65.9
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 6.4e-101 371.3 272 68.8
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.4e-101 371.3 279 68.1
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 6.4e-101 371.3 279 66.3
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.4e-100 370.2 279 68.1
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 1.9e-100 369.8 276 65.9
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.2e-100 369.0 276 65.2
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 3.2e-100 369.0 276 65.2
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 3.2e-100 369.0 279 67.0
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 4.1e-100 368.6 276 68.5
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 4.1e-100 368.6 272 67.3
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.1e-100 368.6 278 67.6
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.0e-100 367.9 276 65.9
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 7.0e-100 367.9 276 65.6
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 7.0e-100 367.9 273 68.9
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 9.2e-100 367.5 276 68.8
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 3.5e-99 365.5 276 66.7
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 4.6e-99 365.2 279 64.9
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 6.0e-99 364.8 271 66.8
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 7.8e-99 364.4 272 67.3
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.0e-98 364.0 280 66.8
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.9e-98 362.1 280 66.8
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 3.9e-98 362.1 284 66.5
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 6.6e-98 361.3 276 64.1
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 6.6e-98 361.3 276 65.9
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 8.6e-98 360.9 280 66.1
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 8.6e-98 360.9 277 68.6
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.1e-97 360.5 280 66.4
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 2.5e-97 359.4 272 64.3
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 2.5e-97 359.4 273 66.3
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 3.3e-97 359.0 282 66.3
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 9.5e-97 357.5 277 65.7
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 2.1e-96 356.3 232 72.8
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 2.1e-96 356.3 276 66.7
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 2.8e-96 355.9 272 65.8
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 4.7e-96 355.1 272 65.1
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 6.2e-96 354.8 230 74.8
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 8.1e-96 354.4 276 64.9
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 8.1e-96 354.4 276 65.2
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 1.4e-95 353.6 232 73.3
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 1.4e-95 353.6 256 68.0
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.3e-95 352.8 276 65.6
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 2.3e-95 352.8 271 64.9
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 6.8e-95 351.3 273 65.9
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 8.9e-95 350.9 277 63.5
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.2e-94 350.5 272 62.9
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.2e-94 350.5 272 62.9
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 4.4e-94 348.6 252 67.9
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 9.9e-94 347.4 272 65.4
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.3e-93 347.1 284 60.6
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.7e-93 346.7 272 63.2
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 2.9e-93 345.9 273 61.9
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 4.9e-93 345.1 273 62.3
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 4.9e-93 345.1 272 63.6
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 6.4e-93 344.7 233 74.7
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 1.4e-92 343.6 273 61.9
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.4e-92 343.6 274 60.2
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 1.4e-92 343.6 272 63.2
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 1.9e-92 343.2 272 63.2
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 4.1e-92 342.0 293 60.1
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 7.1e-92 341.3 273 63.4
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 7.1e-92 341.3 230 70.0
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 1.6e-91 340.1 279 61.3
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 1.6e-91 340.1 232 69.0
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 2.7e-91 339.3 287 57.8
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 2.7e-91 339.3 287 57.8
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 1.3e-90 337.0 302 57.9
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 2.3e-90 336.3 286 57.7
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 6.6e-90 334.7 286 57.7
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 8.6e-90 334.3 284 59.5
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 8.6e-90 334.3 288 56.9
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 1.1e-89 334.0 280 58.6
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.9e-89 333.2 287 56.8
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 3.3e-89 332.4 281 58.7
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 3.3e-89 332.4 289 56.7
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 3.3e-89 332.4 289 56.7
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 4.3e-89 332.0 285 56.1
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 7.3e-89 331.3 284 58.5
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 7.3e-89 331.3 276 58.7
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 9.5e-89 330.9 287 57.1
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 9.5e-89 330.9 280 58.9
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.2e-88 330.5 287 56.1
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.2e-88 330.5 290 56.9
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.2e-88 330.5 290 56.9
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.6e-88 330.1 284 59.2
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 2.1e-88 329.7 289 56.1
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 2.1e-88 329.7 284 59.2
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 2.1e-88 329.7 284 58.5
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 2.1e-88 329.7 273 66.3
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 2.8e-88 329.3 280 58.9
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 2.8e-88 329.3 284 59.2
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 2.8e-88 329.3 284 59.2
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 3.6e-88 328.9 285 58.9
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 6.2e-88 328.2 284 58.1
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 8.1e-88 327.8 232 67.2
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 8.1e-88 327.8 281 58.0
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 1.4e-87 327.0 284 58.8
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.4e-87 327.0 277 58.5
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 5.2e-87 325.1 295 55.9
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 1.3e-85 320.5 285 56.8
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.3e-85 320.5 271 59.4
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 2.2e-85 319.7 273 59.7
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 4.9e-85 318.5 279 57.0
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 4.9e-85 318.5 232 65.5
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 1.7e-82 310.1 232 65.5
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.1e-81 307.4 234 67.5
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 1.9e-81 306.6 278 56.8
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.2e-80 303.9 248 60.5
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.9e-77 292.0 281 56.2
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.9e-76 290.0 281 55.9
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.5e-73 280.4 185 72.4
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 6.9e-71 271.6 223 61.0
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.6e-70 269.6 224 55.8
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 9.9e-70 267.7 198 65.7
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 1.3e-69 267.3 282 50.4
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 1.4e-68 263.8 273 51.3
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 5.6e-65 251.9 238 50.8
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 4.5e-62 242.3 213 55.4
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 2.1e-59 233.4 186 61.3
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 1.0e-58 231.1 235 46.4
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 6.7e-58 228.4 188 63.3
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 3.4e-54 216.1 280 40.7
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 2.1e-51 206.8 158 65.8
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 4.1e-47 192.6 156 63.5
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 5.3e-47 192.2 156 60.9
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.5e-44 182.2 225 46.2
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.3e-42 176.8 177 54.2
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 2.5e-41 173.3 234 38.0
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 1.3e-40 171.0 205 43.9
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 5.7e-33 145.6 139 55.4
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 7.4e-33 145.2 139 55.4
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 7.4e-33 145.2 139 55.4
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 1.0e-21 108.2 116 47.4
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-18 97.1 116 37.9
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.2e-17 94.7 74 58.1
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.3e-15 85.9 178 29.2


User provided reference genes

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