Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G044260 Cucumis sativus L. HOM05D008268 ORTHO05D010144 5.4e-149 531.2 309 100.0
MELO3C018179.2 Cucumis melo HOM05D008268 ORTHO05D010144 1.2e-132 476.9 317 80.4
ClCG11G018600 Citrullus lanatus HOM05D008268 ORTHO05D010144 3.7e-97 359.0 338 69.5
Sed0023643 Sechium edule HOM05D008268 ORTHO05D010144 1.3e-38 164.5 318 47.5
Thecc.07G068700 Theobroma cacao HOM05D008268 ORTHO05D010144 7.8e-23 112.1 269 36.1
Duzib170G0253 Durio zibethinus HOM05D008268 ORTHO05D010144 8.9e-19 98.6 267 33.3
CiPaw.11G178900 Carya illinoinensis HOM05D008268 ORTHO05D010144 2.6e-18 97.1 352 32.1
Dinv22349 Davidia involucrata HOM05D008268 ORTHO05D010144 6.4e-17 92.4 328 29.6
Gohir.A01G069900 Gossypium hirsutum HOM05D008268 ORTHO05D010144 6.4e-17 92.4 290 32.1
Phvul.005G087800 Phaseolus vulgaris HOM05D008268 ORTHO05D010144 6.4e-17 92.4 306 33.0
Manes.15G081401 Manihot esculenta HOM05D008268 ORTHO05D010144 1.1e-16 91.7 330 30.0
Prupe.4G192500 Prunus persica HOM05D008268 ORTHO05D010144 5.4e-16 89.4 371 31.5
VMungo1080G0851 Vigna mungo HOM05D008268 ORTHO05D010144 5.4e-16 89.4 310 31.6
Gorai.002G077500 Gossypium raimondii HOM05D008268 ORTHO05D010144 2.1e-15 87.4 284 32.4
Gohir.D01G057100 Gossypium hirsutum HOM05D008268 ORTHO05D010144 2.7e-15 87.0 284 32.4
Duzib213G0412 Durio zibethinus HOM05D008268 ORTHO05D010144 1.0e-14 85.1 274 31.8
Cfa020486 Carpinus fangiana HOM05D008268 ORTHO05D010144 3.9e-14 83.2 283 32.5
Dinv08361 Davidia involucrata HOM05D008268 ORTHO05D010144 5.1e-14 82.8 340 29.1
GSVIVG01014468001 Vitis vinifera HOM05D008268 ORTHO05D010144 5.1e-14 82.8 168 44.0
MD11G1234600 Malus domestica HOM05D008268 ORTHO05D010144 1.9e-13 80.9 396 31.1
Glyma.13G282800 Glycine max HOM05D008268 ORTHO05D010144 2.5e-13 80.5 345 30.1
QL08p017136 Quercus lobata HOM05D008268 ORTHO05D010144 7.3e-13 79.0 341 29.3
Cpa.g.sc12.16 Carica papaya HOM05D008268 ORTHO05D010144 1.2e-12 78.2 344 30.5
Potri.011G125600 Populus trichocarpa HOM05D019858 ORTHO05D010144 2.1e-12 77.4 365 28.2
Potri.001G409000 Populus trichocarpa HOM05D019858 ORTHO05D010144 6.2e-12 75.9 365 28.8
Rhsim06G0192000 Rhododendron simsii HOM05D008268 ORTHO05D010144 1.8e-11 74.3 328 29.3
Sabra16G0271800 Salix brachista HOM05D019858 ORTHO05D010144 8.9e-11 72.0 354 27.4
Sabra16G0276800 Salix brachista HOM05D019858 ORTHO05D010144 8.9e-11 72.0 354 27.4
Lsat_1_v5_gn_0_5400 Lactuca sativa HOM05D008268 ORTHO05D010144 1.2e-10 71.6 246 30.9
TWI38G2068 Tripterygium wilfordii HOM05D008268 ORTHO05D010144 1.2e-10 71.6 210 34.3
MD03G1216800 Malus domestica HOM05D008268 ORTHO05D010144 5.8e-10 69.3 198 37.4
TAR626G0659 Trochodendron aralioides HOM05D008268 ORTHO05D010144 5.8e-10 69.3 302 29.5
Nitab4.5_0001252g0050 Nicotiana tabacum HOM05D015394 ORTHO05D017774 9.9e-10 68.6 314 29.0
Actinidia09966 Actinidia chinensis HOM05D008268 ORTHO05D010144 2.9e-09 67.0 294 31.3
Eucgr.F01065 Eucalyptus grandis HOM05D008268 ORTHO05D010144 2.9e-09 67.0 199 36.7
PGR083G1493 Punica granatum HOM05D008268 ORTHO05D010144 3.8e-09 66.6 185 34.6
Sabra11G0111900 Salix brachista HOM05D019858 ORTHO05D010144 4.9e-09 66.2 370 26.5
THA.LOC104809278 Tarenaya hassleriana HOM05D010655 ORTHO05D012747 6.4e-09 65.9 165 39.4
Atru.chr2.2941 Acer truncatum HOM05D008268 ORTHO05D010144 1.1e-08 65.1 337 28.2
THA.LOC104799901 Tarenaya hassleriana HOM05D010655 ORTHO05D012747 1.1e-08 65.1 179 36.3
MBI02_g38752_MAGBIO Magnolia biondii HOM05D008268 ORTHO05D010144 1.4e-08 64.7 311 27.0
MBI02_g46151_MAGBIO Magnolia biondii HOM05D008268 ORTHO05D010144 1.4e-08 64.7 311 27.0
Haze_09553 Corylus avellana HOM05D008268 ORTHO05D010144 9.3e-08 62.0 139 41.0
Nitab4.5_0000297g0210 Nicotiana tabacum HOM05D015394 ORTHO05D017774 1.6e-07 61.2 312 29.8
Migut.M01849 Erythranthe guttata HOM05D008268 ORTHO05D010144 2.7e-07 60.5 271 26.6
Aa31LG5G10170 Aethionema arabicum HOM05D010655 ORTHO05D012747 7.8e-07 58.9 147 40.1
ATR1132G078 Amborella trichopoda HOM05D008268 ORTHO05D010144 7.8e-07 58.9 196 32.7
Nn1g03824 Nelumbo nucifera HOM05D008268 ORTHO05D010144 7.8e-07 58.9 55 58.2
Nn1g06831 Nelumbo nucifera HOM05D008268 ORTHO05D010144 7.8e-07 58.9 71 54.9
Psat5g247560 Pisum sativum HOM05D008268 ORTHO05D010144 7.8e-07 58.9 336 26.5
Carub.0007s1355 Capsella rubella HOM05D010655 ORTHO05D012747 3.0e-06 57.0 162 36.4
A01p18510 Brassica napus HOM05D010655 ORTHO05D012747 3.9e-06 56.6 170 34.1
AL7G25480 Arabidopsis lyrata HOM05D010655 ORTHO05D012747 5.1e-06 56.2 161 34.8
CARHR234980 Cardamine hirsuta HOM05D010655 ORTHO05D012747 5.1e-06 56.2 152 37.5
BolC1t02292H Brassica oleracea HOM05D010655 ORTHO05D012747 8.7e-06 55.5 169 34.9
BraA01t01800Z Brassica rapa HOM05D010655 ORTHO05D012747 8.7e-06 55.5 170 33.5


User provided reference genes

Program Settings