Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.1e-122 443.4 224 100.0
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 6.6e-88 327.8 181 91.2
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 2.9e-75 285.8 148 98.0
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 4.0e-61 238.8 161 77.6
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 3.6e-46 189.1 148 68.2
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 3.1e-45 186.0 149 67.1
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 5.3e-45 185.3 150 72.0
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 5.8e-44 181.8 150 69.3
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 1.3e-43 180.6 150 65.3
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.7e-43 180.3 148 62.8
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.2e-43 179.9 149 65.8
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 2.9e-43 179.5 149 65.8
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 3.8e-43 179.1 149 65.8
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 4.9e-43 178.7 148 66.2
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 4.2e-42 175.6 148 64.2
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.6e-41 173.7 171 59.6
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 2.1e-41 173.3 155 61.3
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.7e-41 172.9 150 64.0
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.7e-41 172.9 149 64.4
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.5e-41 172.6 149 62.4
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 1.9e-39 166.8 156 59.6
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 4.3e-39 165.6 148 61.5
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.3e-39 165.6 148 61.5
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.3e-38 164.1 148 60.8
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.6e-38 163.7 148 60.1
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.6e-38 163.7 149 63.8
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.8e-38 162.9 148 60.8
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 6.2e-38 161.8 148 62.8
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 8.1e-38 161.4 151 59.6
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.4e-37 160.6 148 60.8
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 9.0e-37 157.9 151 60.9
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 1.2e-36 157.5 151 60.3
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 1.2e-36 157.5 148 58.8
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.2e-36 157.5 151 59.6
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.5e-36 157.1 149 61.7
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 2.0e-36 156.8 151 63.6
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 2.6e-36 156.4 149 61.7
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 5.8e-36 155.2 151 61.6
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.3e-35 154.1 150 56.0
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 1.3e-35 154.1 148 58.8
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.3e-35 154.1 161 59.0
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 2.2e-35 153.3 150 59.3
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 2.9e-35 152.9 151 60.3
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 4.9e-35 152.1 151 58.3
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 6.4e-35 151.8 149 61.1
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 6.4e-35 151.8 148 58.1
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 1.1e-34 151.0 151 57.6
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 2.4e-34 149.8 151 58.9
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 9.3e-34 147.9 151 58.9
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.6e-33 147.1 152 57.9
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.6e-33 147.1 148 58.1
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 2.7e-33 146.4 152 57.2
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 3.5e-33 146.0 151 58.9
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 3.5e-33 146.0 151 58.9
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 3.5e-33 146.0 151 58.3
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 4.6e-33 145.6 141 61.7
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 7.9e-33 144.8 150 56.7
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 1.3e-32 144.1 149 55.7
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 1.8e-32 143.7 152 59.2
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.8e-32 143.7 151 57.6
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 2.3e-32 143.3 163 51.5
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 2.3e-32 143.3 148 59.5
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 3.9e-32 142.5 171 52.6
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 5.1e-32 142.1 155 57.4
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 6.7e-32 141.7 146 55.5
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 1.1e-31 141.0 146 53.4
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.1e-31 141.0 156 54.5
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.5e-31 140.6 149 56.4
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.3e-31 139.4 149 57.7
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 7.4e-31 138.3 150 58.7
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 9.6e-31 137.9 150 56.7
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 1.3e-30 137.5 151 55.6
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 2.8e-30 136.3 148 55.4
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.7e-30 136.0 159 54.7
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 4.8e-30 135.6 150 57.3
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 4.8e-30 135.6 151 57.0
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 6.2e-30 135.2 151 52.3
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 8.1e-30 134.8 152 55.9
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.1e-29 134.4 148 52.0
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.1e-29 134.4 126 56.3
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 1.4e-29 134.0 90 75.6
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 1.4e-29 134.0 90 73.3
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 1.5e-28 130.6 143 55.9
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 2.6e-28 129.8 150 55.3
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 2.6e-28 129.8 104 67.3
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 4.5e-28 129.0 159 51.6
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 4.5e-28 129.0 124 56.5
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 4.5e-28 129.0 158 51.9
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 5.8e-28 128.6 124 54.0
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 1.0e-27 127.9 147 48.3
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 2.9e-27 126.3 145 49.0
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 6.5e-27 125.2 160 48.1
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.4e-26 124.0 154 50.0
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 3.2e-26 122.9 160 48.8
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.6e-25 120.6 140 50.0
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 1.3e-24 117.5 136 47.8
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 5.1e-24 115.5 162 48.1
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 8.7e-24 114.8 169 46.7
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 5.7e-23 112.1 149 47.7
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 3.7e-22 109.4 134 49.3
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 1.8e-21 107.1 149 46.3
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 2.9e-19 99.8 149 45.0
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 4.2e-18 95.9 126 49.2
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 4.2e-18 95.9 120 46.7
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 5.5e-18 95.5 126 46.8
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 1.2e-17 94.4 77 62.3
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 2.7e-17 93.2 126 46.0
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 3.6e-17 92.8 90 54.4
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 1.4e-13 80.9 174 39.1
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 5.3e-13 79.0 91 48.4
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 9.0e-13 78.2 117 42.7
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 1.5e-12 77.4 152 44.7
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 2.0e-12 77.0 93 46.2
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 2.0e-12 77.0 128 43.8
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.0e-11 74.7 98 48.0
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 2.2e-11 73.6 89 46.1
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 7.2e-10 68.6 56 62.5
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 9.4e-10 68.2 128 38.3
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 4.6e-09 65.9 91 44.0
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 2.3e-08 63.5 50 66.0
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 5.1e-08 62.4 53 56.6
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 8.8e-08 61.6 42 71.4
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 1.1e-07 61.2 48 62.5
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 1.5e-07 60.8 92 38.0
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 3.3e-07 59.7 58 51.7
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 4.4e-07 59.3 93 43.0
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 2.2e-06 57.0 103 37.9


User provided reference genes

Program Settings