Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 7.4e-90 334.0 182 100.0
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.3e-81 306.6 182 92.3
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.5e-53 213.4 183 70.5
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 7.5e-50 201.1 184 69.0
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 5.2e-43 178.3 183 62.8
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 2.5e-37 159.5 160 56.9
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 4.3e-37 158.7 128 69.5
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 1.2e-36 157.1 182 56.6
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.6e-36 156.8 193 52.8
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.6e-36 156.8 188 56.9
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 4.7e-36 155.2 184 51.6
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 1.1e-35 154.1 177 54.8
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.8e-35 153.3 146 58.9
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 2.3e-35 152.9 185 51.9
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 4.0e-35 152.1 191 52.9
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 8.9e-35 151.0 188 53.7
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 8.9e-35 151.0 185 56.2
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 1.2e-34 150.6 184 54.3
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.2e-34 150.6 188 53.2
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 7.6e-34 147.9 94 80.9
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 7.6e-34 147.9 172 54.7
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.9e-34 147.5 106 73.6
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.3e-33 147.1 185 52.4
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.7e-33 146.7 97 81.4
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.2e-33 146.4 186 52.7
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 2.9e-33 146.0 128 61.7
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 3.8e-33 145.6 195 50.3
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 3.8e-33 145.6 188 51.1
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.8e-33 145.6 186 50.5
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 6.4e-33 144.8 183 50.8
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 6.4e-33 144.8 94 80.9
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 8.4e-33 144.4 179 53.6
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 8.4e-33 144.4 187 50.8
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 1.4e-32 143.7 177 53.7
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.4e-32 143.7 177 53.7
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.4e-32 143.7 187 52.9
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.9e-32 143.3 187 50.3
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.9e-32 143.3 174 52.9
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 2.4e-32 142.9 96 76.0
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 2.4e-32 142.9 96 76.0
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 2.4e-32 142.9 96 76.0
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.4e-32 142.9 183 53.0
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.4e-32 142.9 176 53.4
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 4.1e-32 142.1 183 50.8
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 4.1e-32 142.1 123 63.4
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 7.1e-32 141.4 93 77.4
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 7.1e-32 141.4 93 77.4
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 7.1e-32 141.4 98 74.5
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 9.2e-32 141.0 191 50.8
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 9.2e-32 141.0 138 57.2
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 1.2e-31 140.6 185 51.4
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.6e-31 140.2 179 52.0
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 2.1e-31 139.8 186 53.2
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 2.7e-31 139.4 187 48.1
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.7e-31 139.4 190 47.9
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 3.5e-31 139.0 125 61.6
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 4.6e-31 138.7 190 48.9
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 4.6e-31 138.7 92 79.3
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 6.0e-31 138.3 189 50.3
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.0e-30 137.5 187 50.8
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.0e-30 137.5 152 53.9
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.3e-30 137.1 189 50.3
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 1.3e-30 137.1 167 52.7
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.3e-30 137.1 193 49.2
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.3e-30 137.1 187 49.7
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.7e-30 136.7 186 52.2
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.7e-30 136.7 188 48.4
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.7e-30 136.7 188 48.4
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 2.3e-30 136.3 91 76.9
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 2.3e-30 136.3 104 69.2
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 3.0e-30 136.0 179 51.4
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 3.0e-30 136.0 185 51.4
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 3.0e-30 136.0 82 84.1
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 3.9e-30 135.6 187 51.9
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 3.9e-30 135.6 156 56.4
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 5.1e-30 135.2 190 51.1
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 8.6e-30 134.4 91 74.7
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 8.6e-30 134.4 91 74.7
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 8.6e-30 134.4 179 51.4
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 8.6e-30 134.4 188 50.5
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.1e-29 134.0 139 56.8
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.1e-29 134.0 186 47.3
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.1e-29 134.0 123 66.7
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.5e-29 133.7 127 58.3
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.5e-29 133.7 207 47.3
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.5e-29 133.7 126 60.3
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.5e-29 133.7 172 48.3
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.9e-29 133.3 170 51.8
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 3.3e-29 132.5 127 62.2
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 4.3e-29 132.1 200 46.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 5.6e-29 131.7 197 44.7
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 7.3e-29 131.3 170 51.2
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 7.3e-29 131.3 199 46.2
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 9.6e-29 131.0 92 71.7
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.8e-28 129.4 192 49.0
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 2.8e-28 129.4 107 64.5
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 3.6e-28 129.0 201 46.8
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.7e-28 128.6 156 53.8
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 1.4e-27 127.1 196 44.9
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.0e-27 125.6 167 45.5
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.9e-27 124.8 184 50.0
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.9e-27 124.4 184 49.5
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.8e-25 119.0 181 45.9
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 4.9e-25 118.6 150 48.7
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.4e-24 117.1 77 77.9
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.4e-24 116.3 186 45.7
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 5.4e-24 115.2 82 73.2
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 2.1e-23 113.2 128 51.6
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 1.9e-21 106.7 90 60.0
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 4.3e-21 105.5 72 76.4
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 2.8e-20 102.8 78 65.4
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 4.8e-20 102.1 73 71.2
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 8.1e-20 101.3 118 51.7
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.0e-18 96.7 107 51.4
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.8e-18 95.1 86 58.1
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 5.4e-16 88.6 84 53.6
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.6e-15 85.5 58 74.1
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 9.6e-13 77.8 61 68.9
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 8.1e-12 74.7 62 66.1
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.4e-11 73.9 118 34.7
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.8e-11 73.6 141 41.1
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 2.4e-11 73.2 76 57.9
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 4.0e-11 72.4 166 36.7
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.3e-09 67.4 144 39.6
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.7e-09 67.0 42 81.0
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 3.2e-08 62.8 144 38.9
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 7.9e-07 58.2 133 35.3
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.0e-06 57.8 125 40.0
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 3.9e-06 55.8 38 71.1
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 5.1e-06 55.5 122 32.0
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 6.7e-06 55.1 175 32.0


User provided reference genes

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