Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 2.4e-240 835.1 424 100.0
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 4.1e-224 781.2 424 93.9
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 3.6e-196 688.3 358 96.4
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.7e-185 652.9 414 82.4
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 1.4e-155 553.5 368 76.9
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 2.4e-155 552.7 392 70.4
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 3.1e-155 552.4 379 74.7
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 9.0e-155 550.8 352 78.4
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 9.0e-155 550.8 352 78.4
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 5.8e-154 548.1 370 74.9
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 2.9e-153 545.8 379 73.1
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 1.1e-152 543.9 378 73.3
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 1.9e-152 543.1 376 73.1
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 2.5e-152 542.7 376 72.3
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 7.1e-152 541.2 369 74.0
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 7.1e-152 541.2 365 74.5
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.7e-151 539.3 368 73.6
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 2.5e-149 532.7 366 74.0
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 7.4e-149 531.2 368 73.4
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 2.2e-148 529.6 370 72.2
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 2.8e-148 529.3 367 72.2
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 6.3e-148 528.1 379 71.8
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 8.2e-148 527.7 372 71.2
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 4.1e-147 525.4 356 75.0
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 4.1e-147 525.4 383 70.5
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 1.2e-146 523.9 387 70.3
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 2.0e-146 523.1 352 72.7
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 3.4e-146 522.3 364 71.4
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 4.5e-146 521.9 379 70.4
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 7.6e-146 521.2 373 71.3
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 2.9e-145 519.2 370 71.1
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 2.9e-145 519.2 373 71.0
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 8.5e-145 517.7 353 73.9
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 4.2e-144 515.4 419 64.2
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 9.4e-144 514.2 365 71.0
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 2.7e-143 512.7 342 74.3
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 4.6e-143 511.9 364 70.1
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 7.9e-143 511.1 353 73.7
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 1.8e-142 510.0 426 64.3
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 3.9e-142 508.8 380 67.9
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 5.1e-142 508.4 413 64.9
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 1.5e-141 506.9 364 69.2
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 4.3e-141 505.4 371 68.2
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 9.7e-141 504.2 354 71.2
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 1.3e-140 503.8 360 69.4
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 2.2e-140 503.1 351 71.8
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 2.2e-140 503.1 368 69.8
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 8.2e-140 501.1 367 68.9
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 4.1e-139 498.8 368 69.0
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 5.3e-139 498.4 366 68.6
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 5.3e-139 498.4 368 69.3
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 2.6e-138 496.1 379 67.8
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 5.9e-138 495.0 365 67.9
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 5.9e-138 495.0 370 68.6
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 7.7e-138 494.6 378 65.6
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 7.7e-138 494.6 378 65.6
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 1.3e-137 493.8 372 66.7
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 1.3e-137 493.8 368 68.8
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 2.2e-137 493.0 372 66.4
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 2.2e-137 493.0 408 64.0
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 2.9e-137 492.7 372 66.1
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 3.8e-137 492.3 406 62.8
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 5.0e-137 491.9 345 72.5
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 8.5e-137 491.1 366 66.9
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.1e-136 490.7 363 69.1
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 1.1e-136 490.7 371 66.0
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 1.4e-136 490.3 371 67.9
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 4.2e-136 488.8 376 66.5
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 5.5e-136 488.4 424 60.6
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 1.2e-135 487.3 349 71.3
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 1.2e-135 487.3 366 66.9
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 1.6e-135 486.9 367 68.4
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 2.7e-135 486.1 353 67.7
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 6.1e-135 485.0 382 65.4
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 1.4e-134 483.8 370 66.8
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 1.8e-134 483.4 329 73.9
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.9e-134 482.3 359 68.2
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 3.9e-134 482.3 364 68.4
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.1e-133 480.7 382 64.9
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 3.3e-133 479.2 362 66.3
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 6.3e-132 474.9 368 67.7
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 1.1e-131 474.2 370 65.9
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 2.2e-129 466.5 358 67.9
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 1.1e-128 464.2 352 66.2
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 2.0e-125 453.4 336 69.6
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 4.4e-125 452.2 314 72.3
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 7.4e-125 451.4 339 68.4
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 2.2e-124 449.9 368 63.9
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 5.9e-122 441.8 315 69.8
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 6.5e-121 438.3 304 73.4
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 2.5e-120 436.4 321 69.2
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 4.1e-115 419.1 271 75.3
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 1.5e-112 410.6 321 64.5
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.6e-111 406.0 363 56.2
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 2.3e-110 403.3 354 57.3
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.7e-105 387.1 360 53.9
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 4.5e-98 362.5 355 51.0
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 9.5e-88 328.2 252 62.3
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 2.8e-87 326.6 404 50.0
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 9.8e-85 318.2 340 47.4
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 2.1e-82 310.5 258 65.1
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 3.0e-81 306.6 276 55.1
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 8.1e-79 298.5 186 80.1
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 3.3e-72 276.6 361 42.9
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 1.4e-70 271.2 185 72.4
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 4.4e-69 266.2 183 67.8
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 4.6e-66 256.1 410 36.3
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 4.6e-66 256.1 410 36.3
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 9.0e-62 241.9 409 34.5
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 8.4e-60 235.3 476 35.1
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 9.3e-59 231.9 214 55.1
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 5.3e-54 216.1 519 28.9
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 1.3e-47 194.9 364 36.0
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 1.4e-43 181.4 161 58.4
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 1.8e-38 164.5 128 60.2
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 4.2e-35 153.3 115 60.9
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 7.7e-21 105.9 71 70.4
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 1.3e-20 105.1 75 76.0
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.7e-18 97.4 178 34.8
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 1.8e-17 94.7 68 72.1
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 2.0e-16 91.3 61 67.2
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 2.6e-16 90.9 70 65.7
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.6e-16 90.9 171 36.8
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.8e-15 87.4 170 34.1
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 8.2e-15 85.9 187 32.1
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 2.1e-10 71.2 53 67.9
QL02p001457 Quercus lobata HOM05D002735 ORTHO05D003048 1.4e-06 58.5 93 43.0


User provided reference genes

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