Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 2011.1 1003 100.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 1941.0 1002 96.5
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 1865.5 1002 91.9
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 1705.3 1003 84.7
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 1371.3 1014 68.8
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 1367.1 1014 68.4
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 1358.6 1014 69.2
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 1356.3 1024 67.9
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1345.5 1013 67.5
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 1344.3 1024 66.7
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1336.6 1021 66.8
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1334.3 1026 66.5
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 1319.7 1018 65.8
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1303.9 1021 65.3
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1303.9 1021 65.3
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1303.9 1021 65.8
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 1302.3 1013 65.8
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 1301.6 1019 65.7
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1300.4 1022 65.4
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 1291.2 1013 65.4
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 1291.2 1019 64.6
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1284.2 1018 64.7
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 1279.6 1016 64.9
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 1277.3 1009 65.1
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 1273.1 1027 64.6
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 1269.6 1042 62.6
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 1264.6 1022 63.6
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 1252.3 1028 63.4
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 1246.9 1022 63.3
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1245.7 1022 63.6
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1245.7 1023 64.3
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 1243.0 1021 63.1
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1242.6 1028 62.5
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1236.5 1028 62.4
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 1234.9 1018 62.1
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 1232.6 1017 62.8
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 1223.8 1034 61.7
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 1219.9 1033 61.7
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 1213.0 1018 61.0
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 1212.6 1024 61.2
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 1212.2 1029 61.2
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 1211.1 1031 61.8
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 1205.7 1023 61.0
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 1205.3 1023 61.9
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 1204.9 1017 61.2
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 1204.5 1022 61.3
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 1203.7 1033 60.6
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 1203.3 1013 60.9
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 1202.6 1016 60.4
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1202.2 1028 61.2
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 1197.6 1026 61.1
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 1194.9 1025 61.1
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 1191.4 1013 60.2
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 1191.0 1030 60.5
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 1189.5 1029 60.6
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 1188.7 1025 60.6
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 1185.6 1013 59.8
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1180.2 939 65.1
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 1179.9 1020 59.9
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 1177.9 1016 60.5
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 1174.5 1022 59.9
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 1174.5 1023 60.8
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1174.1 1016 60.1
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 1174.1 1016 60.1
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 1173.3 1023 59.0
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 1172.1 1024 60.6
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 1171.8 1021 59.9
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 1169.8 1014 60.2
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1166.4 1013 60.2
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 1166.4 1013 60.2
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 1166.4 1017 60.1
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1166.0 1027 60.7
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 1164.8 1027 58.7
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 1164.1 1029 59.9
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 1163.3 1020 60.3
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 1142.9 1018 59.3
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 1141.3 1018 59.2
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 1140.2 1016 59.0
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 1140.2 1015 59.0
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 1138.3 1018 59.0
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 1137.5 1021 58.9
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 1088.9 1026 57.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.6e-309 1065.4 923 61.1
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 6.3e-308 1060.8 1012 55.9
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 8.0e-295 1017.3 1015 54.3
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 2.0e-293 1012.7 1084 52.7
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.4e-283 979.9 922 56.6
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 1.4e-275 953.4 664 70.9
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 4.4e-269 931.8 780 64.0
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 2.0e-253 879.8 1104 45.9
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 4.6e-250 868.6 617 71.2
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 8.2e-247 857.8 617 69.7
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 7.4e-240 834.7 623 66.8
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 5.9e-237 825.1 595 69.2
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 4.7e-226 788.9 917 49.3
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.6e-216 756.5 739 56.2
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 2.0e-200 703.7 1095 40.6
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 1.9e-195 687.2 1134 38.8
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 1.8e-190 670.6 1043 39.0
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 3.0e-148 530.4 1015 36.8
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 1.1e-145 521.9 475 58.1
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 8.5e-103 379.4 371 55.5
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 2.2e-90 338.2 1115 27.2
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 3.6e-77 294.3 318 49.4
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 1.4e-73 282.3 965 26.7
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 5.6e-70 270.4 1136 25.2
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 4.0e-68 264.2 303 46.9
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 2.1e-61 241.9 315 44.4
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.3e-60 238.4 199 60.3
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 4.1e-57 227.6 238 52.1
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 2.6e-51 208.4 235 49.4
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 1.3e-47 196.1 190 57.4
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 5.1e-47 194.1 272 40.8
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 6.9e-36 157.1 225 40.4
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.5e-30 138.7 170 42.4
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 9.0e-28 130.2 102 61.8
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 4.9e-26 124.4 137 51.1
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.2e-25 121.3 111 54.1
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.7e-16 92.0 110 43.6


User provided reference genes

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