Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 2382.4 1191 100.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2191.8 1193 92.5
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2060.0 1193 87.2
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 1915.2 1191 81.4
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 1372.1 1200 61.2
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 1359.0 1198 60.0
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 1358.2 1200 60.5
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 1357.0 1205 60.8
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 1352.4 1204 60.5
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1350.9 1203 60.5
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1344.7 1199 60.0
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 1341.3 1203 60.3
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 1339.3 1202 59.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1338.6 1204 60.3
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1329.7 1204 59.9
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 1322.4 1203 59.2
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 1321.2 1202 59.4
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 1315.4 1202 59.7
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 1312.4 1205 60.0
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 1310.0 1203 59.8
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 1308.9 1207 58.8
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 1296.6 1229 58.2
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 1296.2 1203 58.9
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1295.8 1202 58.6
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1273.5 1204 57.7
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 1270.8 1205 58.3
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 1270.8 1206 57.4
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1268.4 1173 58.1
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 1263.4 1207 57.5
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 1258.0 1205 56.2
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 1257.3 1205 56.3
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 1257.3 1206 57.2
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1250.0 1202 56.7
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 1246.5 1203 57.3
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 1239.2 1200 55.5
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 1237.6 1200 56.5
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1231.1 1199 56.4
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 1229.2 1201 55.6
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1226.1 1199 56.2
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1219.9 1204 56.1
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 1214.9 1183 57.1
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 1211.1 1197 54.9
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 1210.3 1199 54.7
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1209.9 1206 55.3
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 1209.1 1209 55.3
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 1206.4 1207 54.8
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 1201.0 1196 54.7
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1198.7 1111 59.0
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 1198.7 1212 54.8
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 1198.3 1203 54.8
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 1196.0 1198 55.1
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 1189.9 1205 55.6
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1184.9 1203 53.7
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 1183.7 1205 54.7
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 1177.9 1208 53.9
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 1170.6 1196 54.5
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1169.1 1182 56.3
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 1169.1 1208 53.7
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 1167.5 1207 53.2
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 1165.2 1214 54.1
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1163.7 1199 54.0
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 1162.9 1212 53.4
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 1157.5 1205 54.3
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 1156.7 1195 54.2
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 1151.0 1193 53.9
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 1147.9 1210 52.6
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 1146.7 1202 53.2
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 1144.4 1193 54.0
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 1141.3 1206 52.7
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 1138.3 1228 53.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 1135.9 1231 52.6
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 1134.0 1196 53.5
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 1133.6 1199 53.0
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1132.9 1194 53.2
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 1132.9 1194 53.2
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 1128.6 1223 52.6
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 1127.9 1193 53.0
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1123.6 1195 52.8
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 1123.6 1195 52.8
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 1112.8 1198 51.7
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 1104.7 1198 52.5
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 1095.1 1197 52.5
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 1088.9 1205 52.4
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1076.2 1013 57.1
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 1.7e-307 1059.7 1216 49.3
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 3.2e-306 1055.4 1212 51.2
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 5.4e-306 1054.7 1194 51.2
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 1.1e-301 1040.4 1232 48.1
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 2.6e-300 1035.8 1064 53.9
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 3.6e-286 988.8 1221 47.3
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 6.2e-286 988.0 1209 47.8
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 3.2e-282 975.7 1022 53.9
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 2.5e-279 966.1 1228 47.6
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 4.3e-271 938.7 1216 45.6
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 4.1e-245 852.4 1275 41.6
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 1.6e-225 787.3 864 50.0
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 9.1e-221 771.5 1173 42.5
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 5.6e-202 709.1 1273 37.2
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 1.4e-200 704.5 1238 38.0
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 1.1e-181 641.7 1199 36.1
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 5.4e-181 639.4 1293 35.6
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 5.4e-173 612.8 1008 40.1
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.3e-137 495.4 1314 31.0
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 3.4e-127 460.7 383 65.3
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.2e-116 425.6 442 51.6
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.1e-76 292.0 185 85.4
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 3.6e-76 291.2 290 58.3
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 2.0e-66 258.8 1214 26.2
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 2.6e-58 231.9 759 27.1
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 5.8e-42 177.6 197 53.8
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 1.9e-40 172.6 140 63.6
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 8.4e-33 147.1 93 76.3
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.6e-31 142.9 252 35.3
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 1.6e-23 116.3 109 59.6
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 3.9e-14 85.1 82 57.3
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 2.0e-10 72.8 340 24.7


User provided reference genes

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