Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.7e-160 569.3 298 100.0
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 3.6e-158 561.6 298 98.7
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 8.0e-158 560.5 298 98.7
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 3.3e-151 538.5 327 88.7
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 6.8e-149 530.8 298 93.0
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 1.5e-127 459.9 294 81.0
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 1.2e-126 456.8 294 81.0
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 4.7e-126 454.9 300 79.7
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.8e-125 453.0 304 78.6
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 3.1e-125 452.2 300 79.3
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 4.0e-125 451.8 301 78.7
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 1.5e-124 449.9 298 78.2
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.4e-124 448.4 298 77.9
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.4e-124 448.4 298 77.9
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 4.4e-124 448.4 298 77.9
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 5.8e-124 448.0 303 76.9
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 7.6e-124 447.6 297 79.8
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 7.6e-124 447.6 300 78.0
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 9.9e-124 447.2 298 77.5
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 2.2e-123 446.0 302 77.8
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 3.7e-123 445.3 294 80.3
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 3.7e-123 445.3 300 79.0
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.4e-122 443.4 298 78.2
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.2e-122 442.2 306 76.8
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 9.2e-122 440.7 301 77.4
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 9.2e-122 440.7 301 77.4
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 1.2e-121 440.3 288 79.2
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 2.1e-121 439.5 301 77.1
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 3.5e-121 438.7 322 71.7
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 1.3e-120 436.8 330 72.4
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 3.9e-120 435.3 293 76.8
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 3.9e-120 435.3 293 76.8
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 5.1e-120 434.9 302 76.2
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 5.1e-120 434.9 291 77.7
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 6.6e-120 434.5 291 77.7
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 6.6e-120 434.5 306 74.5
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 8.6e-120 434.1 301 75.7
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 8.6e-120 434.1 300 76.0
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.9e-119 433.0 289 77.2
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 1.9e-119 433.0 276 80.4
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 2.5e-119 432.6 301 75.7
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.5e-119 432.6 306 74.5
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.5e-119 432.6 296 77.0
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 9.6e-119 430.6 278 79.5
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 9.6e-119 430.6 298 75.5
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 1.2e-118 430.3 286 78.0
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 1.2e-118 430.3 298 77.2
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 2.1e-118 429.5 298 75.2
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 3.6e-118 428.7 280 79.3
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 8.1e-118 427.6 287 76.7
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 1.1e-117 427.2 294 75.5
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 1.1e-117 427.2 293 77.1
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 3.1e-117 425.6 301 74.4
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 3.1e-117 425.6 291 77.0
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 6.8e-117 424.5 301 72.4
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 6.8e-117 424.5 276 79.0
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 8.9e-117 424.1 301 72.4
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 8.9e-117 424.1 286 75.9
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 2.0e-116 422.9 287 76.7
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.6e-116 422.5 265 81.9
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 2.6e-116 422.5 297 73.7
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 2.6e-116 422.5 297 73.7
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 3.4e-116 422.2 283 77.7
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 4.4e-116 421.8 295 74.2
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 4.4e-116 421.8 287 76.0
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 5.8e-116 421.4 288 75.0
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.6e-116 421.0 266 81.2
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.6e-116 421.0 267 81.3
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 7.6e-116 421.0 295 73.6
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 1.7e-115 419.9 284 76.4
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.7e-115 419.9 265 81.5
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.2e-115 419.5 298 73.5
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 2.2e-115 419.5 294 74.5
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 2.2e-115 419.5 283 75.6
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 2.9e-115 419.1 301 71.8
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 3.8e-115 418.7 284 76.4
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 4.9e-115 418.3 316 73.1
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 6.4e-115 417.9 290 74.5
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 6.4e-115 417.9 301 73.1
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 1.1e-114 417.2 278 77.3
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.1e-114 417.2 278 77.3
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 1.1e-114 417.2 283 76.3
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 1.4e-114 416.8 297 75.4
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 1.4e-114 416.8 277 78.3
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 1.9e-114 416.4 296 74.0
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 4.2e-114 415.2 286 76.9
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 5.4e-114 414.8 297 75.4
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 5.4e-114 414.8 278 77.0
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 5.4e-114 414.8 282 75.9
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 7.1e-114 414.5 296 73.6
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 7.1e-114 414.5 303 71.0
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 7.1e-114 414.5 298 73.5
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 9.3e-114 414.1 296 73.6
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 4.6e-113 411.8 287 77.0
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 4.6e-113 411.8 301 73.8
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 7.8e-113 411.0 303 71.0
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 1.0e-112 410.6 283 77.4
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 1.0e-112 410.6 297 73.7
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.3e-112 410.2 296 74.3
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.3e-112 410.2 292 75.3
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 1.3e-112 410.2 302 72.8
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 2.3e-112 409.5 297 74.1
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 3.0e-112 409.1 351 64.4
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.9e-112 408.7 297 74.7
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 8.7e-112 407.5 292 71.6
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 3.3e-111 405.6 298 72.1
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.6e-110 403.3 350 63.7
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 2.1e-110 402.9 280 73.9
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.8e-110 401.7 266 79.3
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 8.1e-110 401.0 301 71.4
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-108 397.1 284 74.3
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 5.4e-106 388.3 299 67.9
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.3e-103 378.6 265 77.0
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.6e-102 376.7 276 70.3
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 3.6e-102 375.6 278 69.8
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 4.8e-102 375.2 300 66.3
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.2e-100 370.5 310 64.5
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.6e-100 367.9 231 80.1
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.9e-99 365.9 301 66.4
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.4e-99 364.8 302 66.2
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.4e-98 362.8 302 65.9
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 4.6e-97 358.6 297 64.6
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.3e-96 357.1 276 67.4
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.3e-96 356.3 258 71.3
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 3.0e-96 355.9 298 64.8
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 3.3e-95 352.4 211 85.3
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 4.3e-95 352.1 289 61.9
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 2.8e-94 349.4 276 63.4
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 1.2e-92 344.0 276 63.4
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 8.7e-88 327.8 291 56.7
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 1.8e-85 320.1 293 62.8
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.9e-80 302.4 223 72.6
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 6.7e-80 301.6 272 62.9
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 2.5e-79 299.7 303 55.8
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 3.1e-77 292.7 291 52.6
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 2.6e-71 273.1 220 65.0
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 1.3e-70 270.8 163 82.2
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 2.4e-69 266.5 202 67.3
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 9.1e-69 264.6 252 58.7
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 1.3e-67 260.8 275 52.7
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 7.7e-60 235.0 199 66.8
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 6.5e-59 231.9 163 73.0
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 9.4e-58 228.0 245 46.9
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 1.1e-42 177.9 169 62.1
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 2.1e-41 173.7 176 57.4
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 2.1e-41 173.7 176 57.4
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 8.3e-38 161.8 105 77.1
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 8.3e-38 161.8 105 77.1
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 5.2e-32 142.5 81 87.7
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 6.8e-32 142.1 95 76.8
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 3.7e-30 136.3 144 54.2
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 4.9e-30 136.0 114 60.5
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 1.1e-21 108.2 85 60.0
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 3.9e-19 99.8 98 57.1
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 6.8e-16 89.0 58 79.3
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 6.8e-16 89.0 52 90.4
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 1.5e-15 87.8 76 55.3
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 2.0e-15 87.4 76 55.3
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 4.9e-14 82.8 81 49.4
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 6.4e-14 82.4 70 68.6
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.4e-13 81.3 90 50.0
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 2.4e-13 80.5 91 47.3
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 5.4e-13 79.3 68 63.2
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 5.4e-13 79.3 74 52.7
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 2.1e-12 77.4 68 63.2
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.0e-11 73.6 58 60.3
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 6.2e-09 65.9 40 80.0
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 4.0e-08 63.2 39 79.5
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 4.0e-08 63.2 39 79.5
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 2.0e-07 60.8 107 43.0


User provided reference genes

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