Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 2.3e-71 273.1 270 100.0
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 4.5e-43 179.1 270 83.7
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 3.4e-38 162.9 212 92.9
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 1.7e-21 107.5 255 66.3
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 4.1e-20 102.8 258 59.3
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 3.5e-19 99.8 269 59.9
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 4.6e-19 99.4 254 56.7
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.5e-17 94.4 249 58.2
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 2.5e-17 93.6 266 56.8
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 2.5e-17 93.6 269 62.1
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 1.2e-16 91.3 271 55.4
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 1.6e-16 90.9 262 56.9
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 2.1e-16 90.5 263 54.8
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 2.8e-16 90.1 272 56.6
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 3.6e-16 89.7 269 54.3
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 3.6e-16 89.7 267 55.8
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 6.2e-16 89.0 265 55.8
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 6.2e-16 89.0 255 54.9
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 1.1e-15 88.2 250 59.6
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 1.8e-15 87.4 268 56.3
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 4.0e-15 86.3 261 55.9
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 6.8e-15 85.5 287 54.4
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 6.8e-15 85.5 268 54.1
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 1.2e-14 84.7 286 53.1
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 1.2e-14 84.7 253 57.3
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 1.2e-14 84.7 270 54.8
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 2.0e-14 84.0 261 55.6
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 2.6e-14 83.6 268 53.4
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 9.9e-14 81.6 281 53.7
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 1.3e-13 81.3 262 53.8
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.7e-13 80.9 253 54.9
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 1.7e-13 80.9 64 64.1
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 1.7e-13 80.9 267 53.9
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 2.9e-13 80.1 269 56.1
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 4.9e-13 79.3 57 66.7
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 4.9e-13 79.3 269 52.4
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 6.4e-13 79.0 57 68.4
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 8.4e-13 78.6 252 54.8
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 8.4e-13 78.6 254 56.7
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 8.4e-13 78.6 59 69.5
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 8.4e-13 78.6 59 67.8
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 1.1e-12 78.2 271 40.6
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.4e-12 77.8 268 52.6
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.4e-12 77.8 52 75.0
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 1.4e-12 77.8 52 75.0
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 1.4e-12 77.8 261 57.5
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 1.4e-12 77.8 285 51.2
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.9e-12 77.4 268 52.2
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 3.2e-12 76.6 278 56.5
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 3.2e-12 76.6 278 56.5
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 3.2e-12 76.6 262 54.2
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 3.2e-12 76.6 262 54.2
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 3.2e-12 76.6 63 68.3
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 4.1e-12 76.3 262 53.4
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 4.1e-12 76.3 262 53.4
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 5.4e-12 75.9 274 56.6
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 5.4e-12 75.9 51 74.5
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 7.1e-12 75.5 272 52.2
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 7.1e-12 75.5 278 52.9
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 7.1e-12 75.5 64 59.4
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 9.2e-12 75.1 63 63.5
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 9.2e-12 75.1 267 53.9
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 1.2e-11 74.7 265 52.8
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 1.6e-11 74.3 251 53.4
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 2.1e-11 73.9 52 67.3
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 2.7e-11 73.6 249 56.2
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.7e-11 73.6 267 53.6
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 3.5e-11 73.2 46 73.9
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 3.5e-11 73.2 52 71.2
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 4.6e-11 72.8 263 54.0
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 4.6e-11 72.8 268 53.0
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 6.0e-11 72.4 259 53.3
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 6.0e-11 72.4 260 53.8
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 7.8e-11 72.0 271 49.4
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 7.8e-11 72.0 259 60.6
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 1.0e-10 71.6 259 52.5
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 1.3e-10 71.2 267 52.8
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.3e-10 71.2 263 53.6
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 1.7e-10 70.9 262 54.6
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 2.3e-10 70.5 252 57.1
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 2.3e-10 70.5 268 50.0
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 2.3e-10 70.5 46 65.2
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 2.3e-10 70.5 67 59.7
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 2.3e-10 70.5 265 60.8
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 3.0e-10 70.1 264 56.8
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 3.9e-10 69.7 267 50.9
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 3.9e-10 69.7 48 66.7
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 5.1e-10 69.3 258 53.1
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 5.1e-10 69.3 261 54.0
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 5.1e-10 69.3 250 54.0
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 5.1e-10 69.3 283 52.3
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 1.1e-09 68.2 255 53.7
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 2.5e-09 67.0 208 58.7
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 3.3e-09 66.6 204 61.8
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 9.6e-09 65.1 122 40.2
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 9.6e-09 65.1 264 50.8
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 2.8e-08 63.5 45 60.0
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 8.1e-08 62.0 262 51.9
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 1.1e-07 61.6 249 51.8
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 2.4e-07 60.5 214 42.5
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 2.4e-07 60.5 265 40.8
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 3.1e-07 60.1 46 58.7
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 6.8e-07 58.9 47 61.7
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 5.8e-06 55.8 47 59.6
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 7.6e-06 55.5 52 57.7


User provided reference genes

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