Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 2470.7 1322 100.0
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 2334.3 1324 92.7
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 2305.8 1301 91.4
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 2167.5 1320 87.7
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1795.8 1330 71.4
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1793.5 1325 71.8
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1792.3 1332 71.1
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1783.5 1326 71.1
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1783.1 1322 71.0
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1779.2 1326 70.0
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1776.5 1268 73.1
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1775.4 1323 71.0
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1775.0 1336 70.3
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1773.1 1328 70.9
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1773.1 1330 70.8
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1769.6 1339 70.1
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1763.0 1305 70.8
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1758.4 1353 68.8
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1756.5 1306 71.4
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1754.6 1335 69.8
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1753.8 1344 68.8
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1745.7 1326 69.8
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1743.4 1304 71.1
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1742.2 1305 71.0
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1738.8 1305 69.7
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1736.5 1329 68.6
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1736.5 1344 68.8
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1724.1 1315 68.7
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1722.2 1334 69.5
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1713.7 1355 67.2
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1713.7 1330 69.2
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1710.7 1309 68.4
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1700.3 1344 66.6
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1699.5 1333 68.3
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1697.2 1337 68.1
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1694.1 1316 69.7
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1690.2 1347 67.1
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1688.7 1288 67.2
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1688.7 1288 67.2
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1688.7 1293 68.5
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1687.2 1298 67.4
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1683.3 1317 66.8
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1682.9 1333 66.8
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1682.5 1287 67.1
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1682.5 1260 68.1
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1681.4 1310 66.5
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1679.5 1346 68.1
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1679.1 1260 68.0
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1678.3 1332 68.8
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1677.5 1260 67.9
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1677.5 1260 67.9
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1675.6 1287 66.6
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1674.8 1260 68.2
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1673.3 1331 67.9
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1672.1 1326 67.9
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1669.8 1289 66.6
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1669.4 1348 67.3
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1668.3 1300 68.0
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1667.1 1289 67.2
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1665.2 1343 65.2
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1663.3 1316 67.4
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1663.3 1331 66.9
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1661.0 1344 67.4
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1659.0 1372 64.8
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1657.5 1346 66.2
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1657.1 1314 67.2
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1656.0 1333 67.1
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1655.2 1291 67.9
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1653.6 1292 67.6
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1650.2 1330 67.1
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1649.0 1332 67.1
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1640.9 1324 67.1
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1620.1 1272 67.1
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1617.8 1306 65.8
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1613.2 1272 66.5
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1612.8 1329 64.9
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1612.8 1339 65.9
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1610.5 1281 65.7
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1597.0 1149 73.7
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1582.8 1334 65.5
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1577.4 1358 64.1
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1577.0 1367 61.6
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1575.8 1323 65.4
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1569.7 1342 64.2
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1569.7 1430 60.5
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1558.1 1338 62.6
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1552.7 1294 64.7
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1533.9 1327 62.9
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1519.2 1328 62.6
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1502.3 1354 60.6
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1490.7 1115 71.8
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1484.5 1339 59.7
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1483.0 1143 67.4
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1467.6 1286 61.7
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1442.6 1180 65.8
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1419.1 1111 68.8
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1408.7 1123 67.4
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1383.6 1202 62.0
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1350.5 1359 55.5
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1257.3 1345 53.6
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1256.5 1111 61.6
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1179.1 1159 58.0
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1109.0 829 70.8
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.4e-302 1043.5 1354 44.1
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 4.2e-283 978.8 1261 43.8
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 9.3e-283 977.6 1303 43.1
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 7.4e-280 968.0 1358 41.6
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.0e-276 957.6 1300 42.3
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 1.2e-274 950.7 756 67.3
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 2.7e-242 843.2 1336 39.8
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 5.2e-233 812.4 804 58.7
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.1e-174 615.9 657 54.0
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 2.0e-152 544.7 1300 30.6
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 3.4e-152 543.9 1171 29.6
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 9.7e-139 499.2 552 53.8
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 2.7e-117 427.9 364 64.0
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 5.4e-105 387.1 346 65.3
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 8.9e-84 316.6 1145 24.8
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 1.7e-74 285.8 1104 24.0
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.8e-60 239.2 242 59.1
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.8e-60 239.2 242 59.1
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.1e-60 238.4 208 60.1
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.4e-58 230.3 208 59.6
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 2.4e-57 228.8 1252 24.0
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.5e-57 227.6 208 58.2
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.8e-52 212.6 186 60.2
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.8e-50 204.9 240 53.3
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 3.2e-49 201.8 161 63.4
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.0e-48 197.6 174 64.4
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 6.0e-48 197.6 224 49.1
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.3e-47 195.7 163 67.5
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 4.5e-43 181.4 181 55.8
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.7e-38 164.5 136 67.6
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.2e-35 156.8 155 54.2
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 1.7e-34 152.9 119 68.1
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 9.7e-30 137.1 143 56.6
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 8.2e-29 134.0 122 63.1
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.3e-28 131.3 107 58.9
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.2e-25 122.1 99 69.7
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 2.7e-24 119.0 99 66.7
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.1e-24 117.9 97 69.1
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 1.1e-22 113.6 91 67.0
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.5e-22 113.2 79 77.2
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 1.1e-20 107.1 143 56.6
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 2.6e-19 102.4 77 71.4
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 2.6e-19 102.4 77 71.4
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 5.0e-18 98.2 108 49.1
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.2e-17 95.1 63 77.8
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 4.2e-17 95.1 90 51.1
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 9.4e-17 94.0 69 68.1
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 4.0e-15 88.6 97 48.5
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 6.7e-15 87.8 62 64.5
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 2.0e-14 86.3 65 70.8
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 1.7e-13 83.2 40 95.0
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 6.1e-08 64.7 81 50.6
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 8.0e-08 64.3 65 55.4
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.6e-06 59.3 70 47.1


User provided reference genes

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