Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 0.0e+00 1372.8 693 100.0
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 0.0e+00 1164.8 697 87.2
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 0.0e+00 1153.7 702 85.6
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 0.0e+00 1131.3 693 82.1
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 7.6e-244 847.4 697 62.8
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.8e-243 845.1 691 62.5
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 6.4e-243 844.3 697 61.8
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.6e-241 839.7 693 61.6
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 4.6e-241 838.2 694 61.8
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 4.8e-238 828.2 693 61.9
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.9e-234 816.2 694 59.9
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.2e-234 815.5 696 61.1
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.2e-234 815.5 696 61.1
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.2e-234 815.5 696 61.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 7.1e-234 814.3 692 61.6
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.2e-233 813.5 693 60.3
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 2.1e-233 812.8 696 60.6
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 7.9e-233 810.8 695 60.1
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.3e-232 809.3 692 61.3
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 2.3e-232 809.3 695 60.3
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 3.9e-232 808.5 699 59.9
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 5.1e-232 808.1 692 59.5
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.5e-231 806.6 692 60.8
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 9.7e-231 803.9 692 59.0
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.4e-229 800.0 696 59.9
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 5.3e-229 798.1 692 61.4
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 5.9e-228 794.7 697 59.5
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.8e-227 792.0 692 60.0
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.2e-226 788.9 692 60.0
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 5.5e-226 788.1 701 57.9
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 6.9e-221 771.2 723 56.6
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.0e-219 767.3 700 57.7
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 5.0e-219 765.0 694 58.5
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 8.5e-219 764.2 697 57.8
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.2e-218 762.3 648 61.7
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.2e-217 760.4 719 57.4
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 3.9e-216 755.4 703 56.6
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.5e-215 753.4 733 55.0
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 3.1e-213 745.7 649 59.2
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 9.1e-213 744.2 699 55.2
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.9e-210 736.5 786 50.6
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.5e-210 736.1 697 56.4
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.0e-208 730.7 695 54.1
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 6.7e-208 728.0 700 54.7
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 2.0e-207 726.5 697 55.1
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 5.7e-207 724.9 699 55.2
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 9.7e-207 724.2 698 54.4
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 3.7e-206 722.2 697 54.8
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 4.1e-205 718.8 697 55.4
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 9.1e-205 717.6 713 55.4
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.2e-204 717.2 697 52.7
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 5.9e-204 714.9 697 54.9
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.0e-203 714.1 694 54.2
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.2e-201 707.2 703 52.6
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 3.6e-201 705.7 777 51.7
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.3e-200 703.0 696 52.7
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 8.8e-200 701.0 691 55.7
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 8.8e-200 701.0 694 53.3
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 2.0e-199 699.9 696 52.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 3.7e-198 695.7 692 53.6
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 6.3e-198 694.9 695 52.9
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 8.3e-198 694.5 698 52.3
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.8e-197 693.3 698 53.9
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.2e-193 680.6 700 52.9
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.2e-192 675.2 697 52.1
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 6.8e-192 674.9 695 53.5
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 5.4e-189 665.2 696 52.2
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 8.0e-185 651.4 763 47.7
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.6e-183 646.4 696 48.7
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 6.3e-182 641.7 696 48.6
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 8.3e-182 641.3 694 50.4
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.9e-178 630.2 717 49.5
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 5.6e-178 628.6 697 49.9
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.2e-177 627.5 699 47.8
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.0e-176 624.4 599 55.4
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 3.7e-174 615.9 699 48.5
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 3.7e-174 615.9 699 47.9
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.9e-173 613.6 716 47.1
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.4e-173 613.2 544 58.5
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 2.3e-171 606.7 698 45.8
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.9e-171 605.9 703 46.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.6e-170 602.1 698 48.3
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 3.6e-169 599.4 697 47.8
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 3.6e-169 599.4 776 45.7
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.9e-165 587.0 642 51.9
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.4e-165 586.6 699 47.8
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.6e-164 583.9 699 48.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.0e-163 581.3 747 45.5
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.3e-162 576.2 695 46.0
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 1.6e-161 573.9 703 45.2
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 3.6e-161 572.8 699 45.4
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 8.1e-161 571.6 703 45.2
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.1e-160 571.2 699 45.2
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 4.0e-160 569.3 696 45.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 6.8e-160 568.5 704 44.6
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 8.9e-160 568.2 700 45.6
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 4.4e-159 565.8 697 44.0
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.2e-158 563.5 696 45.7
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.0e-155 554.7 651 48.4
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 6.2e-153 545.4 543 50.5
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.2e-150 537.0 702 44.6
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.8e-144 517.3 700 42.7
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 9.0e-144 515.0 509 52.8
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.5e-126 455.7 438 54.3
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 3.9e-123 446.4 701 40.1
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 6.2e-121 439.1 693 38.8
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.9e-117 427.6 463 49.5
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.5e-111 407.9 700 38.4
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 3.4e-111 406.8 559 39.7
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 5.5e-109 399.4 261 76.2
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 5.1e-107 392.9 459 46.0
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 9.7e-106 388.7 594 38.9
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.7e-97 360.1 243 74.9
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 7.2e-93 345.9 241 72.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.6e-92 344.7 705 35.3
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 5.7e-90 336.3 533 39.6
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.0e-87 327.8 785 31.7
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.0e-87 327.8 785 31.7
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 7.7e-87 325.9 788 31.6
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.5e-85 319.7 231 70.6
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.3e-81 308.5 548 37.4
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.7e-76 290.0 360 42.5
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 4.0e-75 287.0 192 75.0
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.5e-74 285.0 193 75.6
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 7.5e-74 282.7 618 33.3
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.7e-73 281.6 208 63.9
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.7e-70 271.6 327 43.1
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.0e-67 262.3 193 67.9
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.9e-61 241.5 728 27.9
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 3.3e-61 240.7 545 30.3
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.3e-57 228.8 188 58.0
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.2e-55 222.2 266 48.9
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 9.5e-53 212.6 143 76.9
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.2e-52 212.2 297 40.4
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.1e-51 209.1 220 47.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.8e-51 206.5 238 46.6
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.7e-46 191.8 237 45.1
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.8e-43 181.8 144 66.0
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 3.1e-43 181.0 181 50.3
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-40 172.2 176 51.1
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.9e-37 161.8 108 71.3
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 4.3e-37 160.6 334 31.7
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.1e-35 154.5 164 50.0
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 7.6e-34 149.8 178 44.9
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 6.0e-31 140.2 84 86.9
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.6e-26 124.8 96 71.9
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.0e-22 112.8 330 27.6
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 4.3e-21 107.5 81 61.7
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.3e-21 107.5 110 51.8
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 7.4e-21 106.7 80 62.5
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 3.6e-20 104.4 201 34.8
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 5.3e-19 100.5 188 34.0
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 9.9e-18 96.3 109 45.9
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 5.3e-11 73.9 351 23.6
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 2.6e-10 71.6 118 33.9
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 6.5e-09 67.0 88 43.2
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.3e-06 59.3 50 54.0


User provided reference genes

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