Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 9.2e-108 394.0 277 100.0
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 4.1e-100 368.6 279 95.7
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 5.8e-86 321.6 279 90.3
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 4.6e-51 205.7 288 72.9
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 8.5e-45 184.9 281 65.5
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 2.6e-41 173.3 279 60.9
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.6e-41 173.3 279 60.9
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 3.3e-41 172.9 295 61.4
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 5.7e-41 172.2 278 63.7
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.3e-40 171.0 282 64.5
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.8e-40 169.9 286 63.6
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.4e-39 167.5 279 59.9
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 5.3e-39 165.6 281 63.7
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 2.0e-38 163.7 263 65.4
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.0e-38 163.7 272 60.7
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 3.5e-38 162.9 263 62.0
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 3.5e-38 162.9 276 54.3
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 7.7e-38 161.8 261 65.5
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.3e-37 161.0 291 62.9
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.7e-37 160.6 258 65.5
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.7e-37 160.6 297 62.6
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 2.2e-37 160.2 272 67.3
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.2e-37 160.2 287 60.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 5.0e-37 159.1 274 52.9
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 5.0e-37 159.1 287 62.0
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.1e-36 157.9 288 59.0
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 1.9e-36 157.1 284 58.5
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 2.5e-36 156.8 288 62.5
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 4.2e-36 156.0 266 66.2
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 4.2e-36 156.0 280 63.2
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 5.5e-36 155.6 265 61.5
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 7.2e-36 155.2 263 66.2
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 9.4e-36 154.8 268 66.4
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.2e-35 154.5 297 57.9
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.2e-35 154.5 279 60.6
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.6e-35 154.1 265 49.4
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 1.6e-35 154.1 304 57.9
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 2.1e-35 153.7 288 63.5
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 2.1e-35 153.7 274 61.3
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.7e-35 153.3 273 63.0
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 3.6e-35 152.9 280 62.5
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.6e-35 152.9 297 57.9
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.6e-35 152.9 271 62.0
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.6e-35 152.9 194 51.0
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.6e-35 152.9 275 62.5
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 4.7e-35 152.5 195 52.8
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 6.1e-35 152.1 296 59.8
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.1e-35 152.1 296 59.8
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.1e-35 152.1 274 62.0
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.0e-35 151.8 294 60.9
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.0e-34 151.4 291 62.9
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.8e-34 150.6 175 53.1
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.3e-34 150.2 297 57.6
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 4.0e-34 149.4 201 49.3
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 5.2e-34 149.1 286 61.2
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 5.2e-34 149.1 280 58.9
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 6.7e-34 148.7 278 60.4
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.5e-33 147.5 266 62.0
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 2.6e-33 146.7 189 52.4
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 7.5e-33 145.2 265 62.6
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 7.5e-33 145.2 265 62.6
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.7e-32 144.1 266 64.3
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.8e-32 143.3 268 62.3
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 3.7e-32 142.9 275 62.5
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 6.3e-32 142.1 275 61.8
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 8.2e-32 141.7 287 56.1
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 8.2e-32 141.7 293 60.4
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 1.8e-31 140.6 264 62.9
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 3.1e-31 139.8 313 55.6
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 5.3e-31 139.0 277 61.0
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.2e-30 137.9 202 48.0
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.0e-30 137.1 194 48.5
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.7e-30 136.7 286 59.1
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 3.5e-30 136.3 244 63.5
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.5e-30 136.0 290 55.5
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.9e-30 135.6 296 55.7
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 7.7e-30 135.2 177 51.4
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 7.7e-30 135.2 284 60.2
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 7.7e-30 135.2 296 56.1
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.0e-29 134.8 264 62.9
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.2e-29 133.7 288 58.3
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.9e-29 133.3 267 57.7
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.8e-29 132.9 285 56.5
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 5.0e-29 132.5 276 56.2
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.1e-28 131.3 279 62.0
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.1e-28 131.3 297 56.6
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.5e-28 131.0 279 58.1
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 3.2e-28 129.8 284 56.3
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 3.2e-28 129.8 284 56.3
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 3.2e-28 129.8 284 56.3
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.2e-28 129.8 264 62.1
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 4.2e-28 129.4 288 56.6
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 4.2e-28 129.4 289 55.4
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.2e-27 127.9 275 58.2
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.6e-27 127.5 287 56.8
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 2.1e-27 127.1 284 56.0
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 2.1e-27 127.1 278 57.9
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 2.1e-27 127.1 318 51.6
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.7e-27 126.7 285 55.8
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 2.7e-27 126.7 282 56.4
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.6e-27 126.3 198 46.5
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.6e-27 126.3 263 57.8
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.0e-26 124.8 291 56.4
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.4e-26 124.4 285 57.2
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.8e-26 124.0 291 53.6
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.8e-26 124.0 284 55.6
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 3.0e-26 123.2 306 55.2
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 4.0e-26 122.9 270 46.7
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.5e-25 120.9 296 52.4
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.5e-25 120.9 290 54.5
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.5e-25 120.9 268 47.0
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.6e-25 120.2 181 46.4
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.4e-25 119.8 307 53.4
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 4.4e-25 119.4 312 55.4
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 4.4e-25 119.4 301 56.8
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 5.7e-25 119.0 284 53.9
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 5.7e-25 119.0 192 44.3
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 7.5e-25 118.6 276 52.9
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.7e-24 117.5 204 44.6
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 2.2e-24 117.1 284 54.2
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 4.8e-24 115.9 294 54.8
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.8e-24 115.9 278 55.8
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.8e-24 115.9 283 53.4
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.3e-24 115.5 264 44.3
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.3e-24 115.5 264 44.3
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 6.3e-24 115.5 223 65.0
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 8.3e-24 115.2 265 54.0
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 8.3e-24 115.2 264 53.0
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 8.3e-24 115.2 264 53.0
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 1.4e-23 114.4 303 53.1
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.4e-23 114.4 303 51.8
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.4e-23 113.6 158 49.4
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 3.1e-23 113.2 267 50.9
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 9.1e-23 111.7 192 46.4
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.0e-22 110.5 234 38.5
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.7e-22 110.2 296 43.6
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.5e-22 109.8 270 55.9
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.0e-21 108.2 172 41.9
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 1.0e-21 108.2 288 55.2
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 3.8e-21 106.3 275 56.7
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.0e-21 105.9 270 55.6
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 6.5e-21 105.5 293 53.9
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 6.5e-21 105.5 274 56.6
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 1.5e-20 104.4 263 53.6
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 5.5e-20 102.4 186 40.3
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 3.6e-19 99.8 203 42.9
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 8.0e-19 98.6 257 56.8
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 1.4e-18 97.8 265 43.4
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 4.0e-18 96.3 211 37.9
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 6.8e-18 95.5 125 49.6
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.2e-17 94.7 164 75.6
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 2.0e-17 94.0 280 52.5
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 4.1e-15 86.3 134 44.8
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.0e-13 81.6 174 38.5
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 8.6e-13 78.6 289 38.8
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.9e-12 77.4 315 48.3
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 9.5e-12 75.1 181 34.3
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 3.6e-11 73.2 129 41.1
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.7e-11 72.8 199 33.7
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 5.7e-09 65.9 78 56.4
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 8.3e-08 62.0 120 42.5
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.1e-07 61.6 261 45.6
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 1.8e-07 60.8 37 78.4
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.2e-06 58.2 141 40.4
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.6e-06 57.8 102 45.1
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 7.8e-06 55.5 119 39.5


User provided reference genes

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