Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.9e-61 238.4 124 100.0
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 7.7e-38 160.6 94 87.2
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 4.4e-33 144.8 90 80.0
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 7.7e-22 107.5 94 61.7
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 3.8e-21 105.1 90 57.8
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.1e-12 77.0 82 48.8
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 1.9e-12 76.3 87 46.0
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.5e-12 75.9 82 45.1
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 5.5e-12 74.7 39 79.5
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 5.5e-12 74.7 37 86.5
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 5.5e-12 74.7 36 86.1
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.2e-12 74.3 49 65.3
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.2e-12 74.3 90 45.6
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 9.4e-12 73.9 35 88.6
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 9.4e-12 73.9 35 88.6
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 9.4e-12 73.9 35 88.6
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 9.4e-12 73.9 35 88.6
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 9.4e-12 73.9 35 88.6
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.2e-11 73.6 37 86.5
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.2e-11 73.6 35 85.7
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.2e-11 73.6 37 81.1
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.6e-11 73.2 36 86.1
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.6e-11 73.2 89 47.2
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 2.1e-11 72.8 43 76.7
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.7e-11 72.4 35 85.7
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.7e-11 72.4 35 85.7
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.7e-11 72.4 35 85.7
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.7e-11 72.4 38 81.6
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.7e-11 72.4 35 85.7
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.7e-11 72.4 35 85.7
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 3.6e-11 72.0 91 42.9
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 3.6e-11 72.0 36 80.6
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.6e-11 72.0 39 76.9
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 4.7e-11 71.6 35 82.9
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 4.7e-11 71.6 35 85.7
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 4.7e-11 71.6 34 88.2
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 6.1e-11 71.2 63 55.6
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.1e-11 71.2 39 76.9
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.1e-11 71.2 39 76.9
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 8.0e-11 70.9 38 78.9
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 8.0e-11 70.9 38 78.9
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 8.0e-11 70.9 39 74.4
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 8.0e-11 70.9 39 74.4
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.4e-10 70.1 35 82.9
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.4e-10 70.1 35 82.9
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.4e-10 70.1 35 82.9
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.4e-10 70.1 35 82.9
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.4e-10 70.1 35 82.9
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.4e-10 70.1 35 82.9
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.4e-10 70.1 38 76.3
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.4e-10 70.1 38 76.3
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.4e-10 70.1 38 71.1
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 1.8e-10 69.7 34 88.2
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.8e-10 69.7 58 58.6
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.8e-10 69.7 37 75.7
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.8e-10 69.7 39 74.4
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 1.8e-10 69.7 51 62.7
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.3e-10 69.3 37 75.7
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.3e-10 69.3 37 75.7
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.3e-10 69.3 33 87.9
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.3e-10 69.3 36 80.6
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.3e-10 69.3 36 80.6
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 2.3e-10 69.3 40 80.0
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 3.0e-10 68.9 60 55.0
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.0e-10 68.9 35 77.1
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.0e-10 68.6 35 77.1
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 4.0e-10 68.6 35 77.1
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 5.2e-10 68.2 37 70.3
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 6.8e-10 67.8 33 84.8
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.8e-10 67.8 33 81.8
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.8e-10 67.8 38 76.3
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.8e-10 67.8 33 81.8
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.8e-10 67.8 38 76.3
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.8e-10 67.8 33 81.8
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 6.8e-10 67.8 67 52.2
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 8.8e-10 67.4 32 87.5
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 8.8e-10 67.4 31 93.5
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 8.8e-10 67.4 32 87.5
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 8.8e-10 67.4 63 52.4
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.2e-09 67.0 67 50.7
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.2e-09 67.0 39 69.2
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.2e-09 67.0 39 69.2
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.5e-09 66.6 36 75.0
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.5e-09 66.6 32 87.5
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.5e-09 66.6 39 66.7
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 2.0e-09 66.2 40 70.0
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.6e-09 65.9 37 70.3
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.6e-09 65.9 39 71.8
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.4e-09 65.5 39 71.8
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 3.4e-09 65.5 33 81.8
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 4.4e-09 65.1 35 74.3
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 7.5e-09 64.3 33 75.8
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.5e-09 64.3 32 81.2
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.5e-09 64.3 33 78.8
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.5e-09 64.3 45 64.4
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 9.8e-09 63.9 32 81.2
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 9.8e-09 63.9 38 73.7
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 9.8e-09 63.9 38 73.7
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.3e-08 63.5 33 72.7
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.3e-08 63.5 32 81.2
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.3e-08 63.5 39 64.1
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 1.7e-08 63.2 31 83.9
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.7e-08 63.2 41 65.9
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.7e-08 63.2 30 90.0
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.7e-08 63.2 45 60.0
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.7e-08 63.2 38 71.1
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.7e-08 63.2 31 87.1
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.2e-08 62.8 35 71.4
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 2.2e-08 62.8 30 90.0
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.2e-08 62.8 39 69.2
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 2.2e-08 62.8 33 75.8
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 2.8e-08 62.4 38 71.1
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.8e-08 62.4 49 53.1
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 3.7e-08 62.0 30 86.7
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 3.7e-08 62.0 39 66.7
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 3.7e-08 62.0 38 68.4
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 4.9e-08 61.6 30 86.7
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.9e-08 61.6 37 67.6
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 6.3e-08 61.2 34 70.6
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 6.3e-08 61.2 37 67.6
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 6.3e-08 61.2 30 86.7
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 6.3e-08 61.2 30 86.7
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 6.3e-08 61.2 30 86.7
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 6.3e-08 61.2 31 80.6
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 6.3e-08 61.2 57 47.4
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 8.3e-08 60.8 32 75.0
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.3e-08 60.8 39 66.7
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.3e-08 60.8 37 73.0
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 8.3e-08 60.8 32 78.1
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 8.3e-08 60.8 31 80.6
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 1.1e-07 60.5 30 83.3
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.1e-07 60.5 30 83.3
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.1e-07 60.5 34 73.5
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.1e-07 60.5 37 62.2
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 1.1e-07 60.5 31 80.6
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 1.1e-07 60.5 30 83.3
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 1.4e-07 60.1 30 80.0
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.4e-07 60.1 31 74.2
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.8e-07 59.7 30 83.3
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 1.8e-07 59.7 30 86.7
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.8e-07 59.7 29 86.2
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 1.8e-07 59.7 30 86.7
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.8e-07 59.7 29 82.8
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 2.4e-07 59.3 30 83.3
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.4e-07 59.3 30 80.0
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 2.4e-07 59.3 32 75.0
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.4e-07 59.3 37 67.6
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 3.1e-07 58.9 38 65.8
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.1e-07 58.5 30 80.0
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 5.4e-07 58.2 30 76.7
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 5.4e-07 58.2 30 80.0
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.4e-07 58.2 37 67.6
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.4e-07 58.2 85 44.7
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 5.4e-07 58.2 30 83.3
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.0e-07 57.8 39 61.5
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.0e-07 57.8 39 61.5
CAN.G1258.3 Capsicum annuum HOM05D003654 ORTHO05D004176 1.2e-06 57.0 58 46.6
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 1.6e-06 56.6 53 52.8
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 2.0e-06 56.2 34 70.6
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 2.0e-06 56.2 60 48.3
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 2.7e-06 55.8 36 61.1
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.5e-06 55.5 30 76.7
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.5e-06 55.1 66 42.4
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 4.5e-06 55.1 38 63.2
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 7.7e-06 54.3 31 71.0
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 7.7e-06 54.3 39 56.4


User provided reference genes

Program Settings