Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 5.6e-131 471.1 261 100.0
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 1.2e-122 443.4 261 92.3
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 3.6e-106 388.7 263 82.9
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 2.7e-101 372.5 219 97.3
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 2.6e-88 329.3 266 69.2
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 6.1e-85 318.2 253 67.6
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 8.7e-84 314.3 262 66.4
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.3e-82 310.5 247 68.8
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 1.3e-82 310.5 267 66.3
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 1.6e-82 310.1 267 68.9
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 8.2e-82 307.8 264 63.6
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 1.4e-81 307.0 249 68.7
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 1.4e-81 307.0 264 66.7
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.8e-81 306.6 250 68.4
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 2.4e-81 306.2 264 63.6
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 2.4e-81 306.2 265 67.2
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 5.3e-81 305.1 250 68.4
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.2e-80 303.9 249 67.5
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 4.5e-80 302.0 262 61.1
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 5.9e-80 301.6 264 60.2
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 7.7e-80 301.2 253 69.2
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 7.7e-80 301.2 249 67.9
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 1.0e-79 300.8 267 66.3
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 1.3e-79 300.4 268 64.9
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.8e-79 298.9 263 66.9
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 3.8e-79 298.9 249 67.5
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 5.0e-79 298.5 258 64.3
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 6.5e-79 298.1 260 63.8
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 6.5e-79 298.1 253 65.6
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 1.4e-78 297.0 249 66.3
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 1.4e-78 297.0 253 66.8
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 1.4e-78 297.0 251 68.9
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 1.9e-78 296.6 268 65.7
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 2.1e-77 293.1 258 65.9
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 2.7e-77 292.7 246 67.9
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 4.6e-77 292.0 250 64.4
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 7.9e-77 291.2 261 65.1
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 7.9e-77 291.2 252 66.3
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 3.0e-76 289.3 244 65.2
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 3.0e-76 289.3 249 67.1
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 3.9e-76 288.9 249 64.3
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 6.7e-76 288.1 248 64.5
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.1e-75 287.3 242 62.8
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 2.5e-75 286.2 251 63.7
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 9.7e-75 284.3 249 64.7
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 9.7e-75 284.3 264 65.2
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 1.3e-74 283.9 249 66.3
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 2.2e-74 283.1 254 64.6
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 3.7e-74 282.3 256 64.1
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 1.1e-73 280.8 253 64.4
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 1.1e-73 280.8 284 57.7
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.4e-73 280.4 248 65.3
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 1.4e-73 280.4 254 64.2
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.4e-73 279.6 261 64.0
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 3.1e-73 279.3 249 66.3
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 2.0e-72 276.6 245 67.3
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 2.6e-72 276.2 255 63.1
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 7.7e-72 274.6 253 62.8
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 1.7e-71 273.5 255 62.4
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 1.7e-71 273.5 255 62.4
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 1.7e-71 273.5 264 61.4
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 2.2e-71 273.1 246 61.0
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 3.8e-71 272.3 254 63.4
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 8.5e-71 271.2 257 61.5
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 1.9e-70 270.0 257 61.1
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 9.4e-70 267.7 264 60.6
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 1.6e-69 266.9 254 57.1
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 4.7e-69 265.4 258 60.5
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 1.8e-68 263.5 253 61.7
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 2.3e-68 263.1 253 61.3
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.0e-68 262.7 221 64.7
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 2.0e-67 260.0 273 59.3
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 1.7e-66 256.9 262 60.7
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 8.2e-66 254.6 221 65.6
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 6.5e-63 245.0 249 60.2
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 1.9e-62 243.4 250 59.2
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 3.6e-61 239.2 249 56.2
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 1.8e-60 236.9 244 58.6
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 4.0e-60 235.7 190 65.3
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 8.8e-60 234.6 270 54.4
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 2.0e-59 233.4 250 58.8
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 3.7e-58 229.2 248 56.0
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 4.8e-58 228.8 249 55.8
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 1.8e-57 226.9 190 61.6
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 1.2e-56 224.2 246 58.1
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 3.5e-56 222.6 251 54.2
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 1.3e-55 220.7 221 61.1
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 3.8e-55 219.2 250 53.2
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 6.5e-55 218.4 249 55.8
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 5.5e-54 215.3 204 61.3
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 3.6e-53 212.6 233 57.9
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 6.1e-53 211.8 250 55.6
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 1.4e-52 210.7 240 55.4
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 1.8e-52 210.3 251 50.6
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.8e-50 203.0 252 48.0
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 2.8e-50 203.0 250 54.8
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 2.0e-48 196.8 191 55.0
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.5e-48 195.7 152 72.4
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 7.2e-46 188.3 258 44.6
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 2.3e-44 183.3 159 61.6
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 3.4e-43 179.5 262 40.1
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 9.8e-43 177.9 150 62.7
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 1.3e-42 177.6 256 50.0
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 7.3e-38 161.8 160 61.9
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 3.0e-36 156.4 262 37.4
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 4.4e-35 152.5 274 39.4
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 5.7e-35 152.1 127 64.6
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.5e-32 142.9 118 76.3
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.5e-32 142.9 118 76.3
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 1.2e-29 134.4 254 37.4
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 6.8e-28 128.6 221 41.6
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 3.9e-23 112.8 158 41.1
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 2.3e-20 103.6 160 41.9
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 2.3e-20 103.6 235 37.0
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 9.8e-19 98.2 170 41.2
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 3.7e-18 96.3 334 29.9
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 1.8e-12 77.4 45 68.9
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 2.0e-11 73.9 129 38.8
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 8.4e-10 68.6 109 38.5
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 2.3e-07 60.5 57 54.4
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 5.6e-06 55.8 47 53.2


User provided reference genes

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